ENSG00000084774

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000264705 ENSG00000084774 HEK293_OSMI2_2hA HEK293_TMG_2hB CAD protein_coding protein_coding 75.72071 97.66415 57.77766 8.105533 1.925844 -0.7572153 43.750697 43.829453 36.03536085 5.3799812 0.69242821 -0.2824162 0.59135000 0.46073333 0.624433333 0.16370000 3.084410e-01 1.565486e-12 FALSE TRUE
ENST00000428460 ENSG00000084774 HEK293_OSMI2_2hA HEK293_TMG_2hB CAD protein_coding protein_coding 75.72071 97.66415 57.77766 8.105533 1.925844 -0.7572153 6.862335 23.754303 0.07994078 6.4013978 0.04905571 -8.0456050 0.07048750 0.23810000 0.001400000 -0.23670000 1.565486e-12 1.565486e-12 FALSE TRUE
ENST00000456311 ENSG00000084774 HEK293_OSMI2_2hA HEK293_TMG_2hB CAD protein_coding protein_coding 75.72071 97.66415 57.77766 8.105533 1.925844 -0.7572153 2.439527 9.086231 0.11064218 3.7540285 0.05997151 -6.2364626 0.02500417 0.08840000 0.001933333 -0.08646667 2.042941e-03 1.565486e-12 FALSE TRUE
ENST00000475695 ENSG00000084774 HEK293_OSMI2_2hA HEK293_TMG_2hB CAD protein_coding retained_intron 75.72071 97.66415 57.77766 8.105533 1.925844 -0.7572153 6.530700 4.092969 6.53812973 0.6531372 0.25313758 0.6744147 0.09196667 0.04210000 0.113266667 0.07116667 1.043633e-05 1.565486e-12 FALSE FALSE
ENST00000491891 ENSG00000084774 HEK293_OSMI2_2hA HEK293_TMG_2hB CAD protein_coding retained_intron 75.72071 97.66415 57.77766 8.105533 1.925844 -0.7572153 4.614781 1.749679 5.12767450 0.2728188 0.84926174 1.5458034 0.06761250 0.01853333 0.087966667 0.06943333 7.688127e-06 1.565486e-12   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000084774 E001 2.2694650 0.1211717644 1.064248e-01 2.002727e-01 2 27217243 27217359 117 + 0.678 0.358 -1.560
ENSG00000084774 E002 3.1752230 0.0046474789 4.133246e-04 1.825545e-03 2 27217360 27217368 9 + 0.887 0.354 -2.412
ENSG00000084774 E003 4.9726488 0.0055769614 1.004815e-02 2.888038e-02 2 27217369 27217383 15 + 0.953 0.605 -1.395
ENSG00000084774 E004 45.9093379 0.0120991748 6.742961e-05 3.677232e-04 2 27217384 27217407 24 + 1.814 1.521 -0.995
ENSG00000084774 E005 266.2634659 0.0184556777 2.501667e-06 1.905882e-05 2 27217408 27217633 226 + 2.584 2.267 -1.056
ENSG00000084774 E006 285.3887599 0.0084279184 5.044616e-10 7.889114e-09 2 27217877 27218016 140 + 2.607 2.304 -1.012
ENSG00000084774 E007 247.5629548 0.0078469686 1.665610e-11 3.345471e-10 2 27221218 27221347 130 + 2.557 2.230 -1.091
ENSG00000084774 E008 253.3533555 0.0124526863 7.933210e-06 5.392619e-05 2 27222194 27222336 143 + 2.535 2.273 -0.872
ENSG00000084774 E009 290.5580460 0.0047243251 2.535404e-15 9.097057e-14 2 27222519 27222660 142 + 2.617 2.307 -1.035
ENSG00000084774 E010 320.6243634 0.0055636604 4.814129e-12 1.055590e-10 2 27222866 27223037 172 + 2.646 2.363 -0.944
ENSG00000084774 E011 340.9122713 0.0096837306 3.770447e-05 2.187212e-04 2 27223563 27223748 186 + 2.633 2.426 -0.688
ENSG00000084774 E012 296.5829369 0.0110679309 2.704195e-05 1.626096e-04 2 27223917 27224029 113 + 2.585 2.357 -0.759
ENSG00000084774 E013 329.0932835 0.0134234950 3.347423e-04 1.519381e-03 2 27224345 27224490 146 + 2.619 2.411 -0.695
ENSG00000084774 E014 322.0096112 0.0131306854 2.213347e-05 1.358201e-04 2 27224745 27224876 132 + 2.630 2.384 -0.823
ENSG00000084774 E015 365.2830920 0.0104089937 9.263666e-06 6.205487e-05 2 27225010 27225243 234 + 2.676 2.446 -0.764
ENSG00000084774 E016 389.1833411 0.0027786750 6.366622e-11 1.159748e-09 2 27225705 27225926 222 + 2.688 2.484 -0.679
ENSG00000084774 E017 306.7231685 0.0019942805 2.839806e-12 6.471703e-11 2 27226131 27226223 93 + 2.587 2.379 -0.694
ENSG00000084774 E018 297.0327834 0.0038158923 4.167216e-07 3.745276e-06 2 27226224 27226319 96 + 2.560 2.376 -0.614
ENSG00000084774 E019 32.2283148 0.0038741202 1.756362e-15 6.433718e-14 2 27226320 27226524 205 + 1.773 1.229 -1.872
ENSG00000084774 E020 343.9290445 0.0060228374 6.479138e-04 2.708773e-03 2 27226525 27226649 125 + 2.601 2.457 -0.478
ENSG00000084774 E021 411.8253006 0.0078583035 5.500746e-04 2.347019e-03 2 27226832 27226958 127 + 2.688 2.530 -0.525
ENSG00000084774 E022 207.6592391 0.0051333115 9.216238e-05 4.851451e-04 2 27226959 27226962 4 + 2.396 2.229 -0.557
ENSG00000084774 E023 0.8052565 0.2859034771 4.855870e-01 6.234615e-01 2 27227501 27227535 35 + 0.353 0.178 -1.307
ENSG00000084774 E024 383.7855828 0.0046999944 2.102092e-05 1.297389e-04 2 27231468 27231580 113 + 2.657 2.498 -0.531
ENSG00000084774 E025 236.8693447 0.0106060199 1.402165e-02 3.827496e-02 2 27231980 27232022 43 + 2.430 2.301 -0.430
ENSG00000084774 E026 439.0199638 0.0035503212 6.406725e-04 2.682842e-03 2 27232023 27232224 202 + 2.687 2.575 -0.375
ENSG00000084774 E027 158.2514575 0.0042593940 1.295173e-02 3.579799e-02 2 27232448 27232454 7 + 2.244 2.137 -0.359
ENSG00000084774 E028 565.2444132 0.0028339810 2.298635e-03 8.146112e-03 2 27232455 27232694 240 + 2.783 2.693 -0.296
ENSG00000084774 E029 239.6204987 0.0003996160 5.195912e-04 2.233150e-03 2 27233042 27233078 37 + 2.408 2.318 -0.301
ENSG00000084774 E030 305.3019316 0.0001741067 1.505034e-04 7.492030e-04 2 27233079 27233140 62 + 2.509 2.425 -0.283
ENSG00000084774 E031 585.7761784 0.0010979412 3.891828e-03 1.284151e-02 2 27233312 27233536 225 + 2.781 2.717 -0.211
ENSG00000084774 E032 42.9956529 0.0005488899 2.604554e-11 5.068046e-10 2 27233537 27233625 89 + 1.817 1.455 -1.231
ENSG00000084774 E033 448.4457106 0.0001477413 3.828525e-05 2.217305e-04 2 27233626 27233808 183 + 2.671 2.594 -0.256
ENSG00000084774 E034 604.2849997 0.0001122672 4.761964e-11 8.876707e-10 2 27234008 27234226 219 + 2.818 2.714 -0.347
ENSG00000084774 E035 444.9340711 0.0001642641 7.985404e-08 8.265823e-07 2 27234518 27234595 78 + 2.683 2.583 -0.333
ENSG00000084774 E036 497.8170827 0.0001325120 2.623829e-06 1.990216e-05 2 27234596 27234685 90 + 2.721 2.638 -0.276
ENSG00000084774 E037 577.3240096 0.0001250435 7.640658e-01 8.472293e-01 2 27235245 27235427 183 + 2.737 2.729 -0.026
ENSG00000084774 E038 394.5353086 0.0006466795 3.213906e-02 7.612619e-02 2 27235536 27235632 97 + 2.536 2.582 0.154
ENSG00000084774 E039 236.5810576 0.0009161818 2.996201e-01 4.411681e-01 2 27235633 27235640 8 + 2.328 2.355 0.091
ENSG00000084774 E040 4.9349701 0.0033216439 5.808092e-02 1.233438e-01 2 27235641 27235876 236 + 0.910 0.656 -1.014
ENSG00000084774 E041 660.4500010 0.0001500268 3.795611e-02 8.726648e-02 2 27236284 27236523 240 + 2.770 2.800 0.097
ENSG00000084774 E042 3.1043562 0.0169607968 5.828751e-01 7.071179e-01 2 27236728 27236748 21 + 0.639 0.548 -0.406
ENSG00000084774 E043 399.6767045 0.0001287093 1.021974e-01 1.938591e-01 2 27236749 27236830 82 + 2.594 2.560 -0.114
ENSG00000084774 E044 537.8845679 0.0001324358 7.987092e-02 1.593591e-01 2 27237379 27237545 167 + 2.684 2.710 0.088
ENSG00000084774 E045 517.2913742 0.0011531218 7.102615e-04 2.935616e-03 2 27237718 27237882 165 + 2.631 2.710 0.263
ENSG00000084774 E046 510.7081824 0.0004851369 2.598368e-05 1.569384e-04 2 27238056 27238187 132 + 2.622 2.703 0.272
ENSG00000084774 E047 669.7260327 0.0001271340 7.017478e-10 1.072216e-08 2 27238431 27238632 202 + 2.732 2.824 0.307
ENSG00000084774 E048 440.1949266 0.0002013878 1.753689e-04 8.585003e-04 2 27239042 27239117 76 + 2.566 2.635 0.229
ENSG00000084774 E049 365.9341841 0.0001912483 4.861467e-05 2.747503e-04 2 27239118 27239151 34 + 2.479 2.560 0.270
ENSG00000084774 E050 445.9548157 0.0008728916 8.256989e-05 4.401660e-04 2 27239152 27239232 81 + 2.559 2.648 0.297
ENSG00000084774 E051 602.9773053 0.0021566523 6.094339e-03 1.885848e-02 2 27239331 27239471 141 + 2.700 2.777 0.254
ENSG00000084774 E052 505.7348083 0.0034460833 3.015168e-03 1.030999e-02 2 27239697 27239798 102 + 2.607 2.709 0.340
ENSG00000084774 E053 25.0968243 0.0007776083 2.515893e-05 1.524479e-04 2 27239799 27240095 297 + 1.559 1.265 -1.016
ENSG00000084774 E054 14.3067915 0.0251106844 2.175601e-01 3.474517e-01 2 27240096 27240222 127 + 1.250 1.109 -0.501
ENSG00000084774 E055 541.0047410 0.0026890083 1.454577e-03 5.488708e-03 2 27240265 27240361 97 + 2.638 2.737 0.327
ENSG00000084774 E056 8.5175749 0.0020705790 5.462531e-01 6.764588e-01 2 27240567 27240617 51 + 0.992 0.920 -0.266
ENSG00000084774 E057 415.8692475 0.0032275757 4.309920e-03 1.401238e-02 2 27240911 27240955 45 + 2.524 2.623 0.328
ENSG00000084774 E058 753.5639014 0.0033638174 2.298579e-06 1.764563e-05 2 27241058 27241227 170 + 2.744 2.895 0.503
ENSG00000084774 E059 551.8584956 0.0016520305 1.474879e-10 2.529755e-09 2 27241322 27241396 75 + 2.597 2.763 0.553
ENSG00000084774 E060 324.6112806 0.0007224967 3.421172e-12 7.696600e-11 2 27241911 27241916 6 + 2.360 2.533 0.579
ENSG00000084774 E061 326.7908170 0.0006741893 2.484248e-12 5.713651e-11 2 27241917 27241920 4 + 2.364 2.536 0.575
ENSG00000084774 E062 841.1602715 0.0005330074 1.056945e-34 2.550766e-32 2 27241921 27242123 203 + 2.741 2.956 0.715
ENSG00000084774 E063 712.6446085 0.0022368521 7.969216e-13 1.989385e-11 2 27242302 27242427 126 + 2.683 2.882 0.662
ENSG00000084774 E064 867.4297394 0.0044038184 6.019065e-09 7.746036e-08 2 27242620 27242775 156 + 2.763 2.971 0.689
ENSG00000084774 E065 4.9714356 0.0258689009 2.558650e-01 3.928013e-01 2 27242776 27242871 96 + 0.639 0.814 0.718
ENSG00000084774 E066 790.0529902 0.0047006210 1.046980e-09 1.547050e-08 2 27242872 27242973 102 + 2.710 2.934 0.746
ENSG00000084774 E067 786.8785614 0.0071988407 9.416646e-10 1.403143e-08 2 27243198 27243292 95 + 2.671 2.943 0.907
ENSG00000084774 E068 1124.1308539 0.0076410879 1.409975e-12 3.369693e-11 2 27243416 27243943 528 + 2.791 3.107 1.050