ENSG00000082898

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000401558 ENSG00000082898 HEK293_OSMI2_2hA HEK293_TMG_2hB XPO1 protein_coding protein_coding 83.78236 21.47938 135.3107 1.601112 4.689996 2.654687 14.9785434 3.194367 21.839747 0.5483570 4.2617264 2.76950520 0.16275417 0.15436667 0.16380000 0.009433333 9.603878e-01 3.528067e-68 FALSE TRUE
ENST00000406957 ENSG00000082898 HEK293_OSMI2_2hA HEK293_TMG_2hB XPO1 protein_coding protein_coding 83.78236 21.47938 135.3107 1.601112 4.689996 2.654687 19.9571645 0.000000 37.612757 0.0000000 1.8625603 11.87738984 0.13799167 0.00000000 0.27796667 0.277966667 3.528067e-68 3.528067e-68 FALSE TRUE
ENST00000451765 ENSG00000082898 HEK293_OSMI2_2hA HEK293_TMG_2hB XPO1 protein_coding protein_coding 83.78236 21.47938 135.3107 1.601112 4.689996 2.654687 0.5935855 2.004251 0.000000 1.8328644 0.0000000 -7.65409983 0.02420417 0.08776667 0.00000000 -0.087766667 8.061740e-02 3.528067e-68 FALSE TRUE
ENST00000676789 ENSG00000082898 HEK293_OSMI2_2hA HEK293_TMG_2hB XPO1 protein_coding protein_coding 83.78236 21.47938 135.3107 1.601112 4.689996 2.654687 14.4240021 0.000000 27.445688 0.0000000 4.1293811 11.42288933 0.12008750 0.00000000 0.20116667 0.201166667 1.771521e-28 3.528067e-68 FALSE TRUE
ENST00000677422 ENSG00000082898 HEK293_OSMI2_2hA HEK293_TMG_2hB XPO1 protein_coding nonsense_mediated_decay 83.78236 21.47938 135.3107 1.601112 4.689996 2.654687 2.6941420 1.928274 1.959819 0.1369437 0.4362684 0.02329008 0.06194167 0.09090000 0.01433333 -0.076566667 1.413648e-10 3.528067e-68 FALSE TRUE
ENST00000677803 ENSG00000082898 HEK293_OSMI2_2hA HEK293_TMG_2hB XPO1 protein_coding protein_coding 83.78236 21.47938 135.3107 1.601112 4.689996 2.654687 1.8874226 6.617316 0.000000 1.2908920 0.0000000 -9.37228091 0.08713333 0.30300000 0.00000000 -0.303000000 6.542543e-48 3.528067e-68 FALSE TRUE
ENST00000678741 ENSG00000082898 HEK293_OSMI2_2hA HEK293_TMG_2hB XPO1 protein_coding nonsense_mediated_decay 83.78236 21.47938 135.3107 1.601112 4.689996 2.654687 8.9146834 0.000000 16.372882 0.0000000 2.4700513 10.67797346 0.06321667 0.00000000 0.12106667 0.121066667 3.244829e-20 3.528067e-68 TRUE TRUE
MSTRG.18496.35 ENSG00000082898 HEK293_OSMI2_2hA HEK293_TMG_2hB XPO1 protein_coding   83.78236 21.47938 135.3107 1.601112 4.689996 2.654687 4.0329557 3.902907 3.846069 2.7171311 1.6329969 -0.02110999 0.08645000 0.17953333 0.02826667 -0.151266667 7.608723e-01 3.528067e-68 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000082898 E001 2.0399639 9.785649e-03 4.744929e-04 2.062519e-03 2 61476032 61477688 1657 - 0.214 0.834 3.196
ENSG00000082898 E002 8.1679169 2.620650e-03 2.139597e-05 1.317362e-04 2 61477689 61477848 160 - 0.705 1.246 2.031
ENSG00000082898 E003 8.2095477 1.206733e-01 4.272151e-02 9.603633e-02 2 61477849 61477933 85 - 0.726 1.226 1.871
ENSG00000082898 E004 9.3456238 5.258639e-02 4.707622e-08 5.105300e-07 2 61477934 61477941 8 - 0.608 1.459 3.185
ENSG00000082898 E005 10.3251977 3.636498e-02 2.951982e-09 4.010356e-08 2 61477942 61477946 5 - 0.659 1.486 3.056
ENSG00000082898 E006 10.6207399 4.674480e-02 2.502565e-08 2.862253e-07 2 61477947 61477953 7 - 0.671 1.496 3.040
ENSG00000082898 E007 15.3636225 1.600956e-02 4.805166e-14 1.429754e-12 2 61477954 61477968 15 - 0.819 1.635 2.915
ENSG00000082898 E008 16.1084005 1.181106e-02 4.340697e-14 1.299308e-12 2 61477969 61477969 1 - 0.859 1.636 2.762
ENSG00000082898 E009 19.6899782 1.925668e-03 4.579273e-20 2.929853e-18 2 61477970 61477979 10 - 0.936 1.714 2.734
ENSG00000082898 E010 40.1308804 6.011443e-03 2.435182e-17 1.127965e-15 2 61477980 61477992 13 - 1.308 1.925 2.103
ENSG00000082898 E011 818.8750022 2.210072e-02 4.332015e-11 8.126422e-10 2 61477993 61478337 345 - 2.639 3.164 1.745
ENSG00000082898 E012 889.6597762 8.863962e-03 5.934080e-13 1.509998e-11 2 61478338 61478699 362 - 2.726 3.103 1.252
ENSG00000082898 E013 803.7528119 4.719626e-03 6.837427e-15 2.312676e-13 2 61478700 61478966 267 - 2.700 3.016 1.054
ENSG00000082898 E014 470.3478858 4.434024e-04 2.854271e-32 5.609264e-30 2 61481185 61481281 97 - 2.474 2.766 0.972
ENSG00000082898 E015 12.8662563 4.425118e-03 1.237292e-06 1.007441e-05 2 61481282 61482086 805 - 0.882 1.414 1.914
ENSG00000082898 E016 7.8002694 2.911473e-02 3.860801e-03 1.275112e-02 2 61482087 61482379 293 - 0.726 1.175 1.691
ENSG00000082898 E017 404.7753285 1.252252e-04 5.986462e-24 5.916105e-22 2 61482380 61482426 47 - 2.417 2.673 0.852
ENSG00000082898 E018 491.9920937 7.194934e-04 1.292793e-16 5.487694e-15 2 61482427 61482539 113 - 2.509 2.736 0.756
ENSG00000082898 E019 1.9346509 7.863087e-03 4.749763e-01 6.137480e-01 2 61482540 61482624 85 - 0.403 0.263 -0.876
ENSG00000082898 E020 2.7001665 5.548708e-03 7.681405e-01 8.501949e-01 2 61482625 61482817 193 - 0.464 0.544 0.388
ENSG00000082898 E021 4.5667459 5.395392e-02 1.370065e-01 2.439172e-01 2 61482818 61482956 139 - 0.580 0.879 1.230
ENSG00000082898 E022 674.5109351 1.508864e-04 1.351317e-11 2.755387e-10 2 61482957 61483091 135 - 2.661 2.818 0.521
ENSG00000082898 E023 0.9890372 1.323464e-02 3.919778e-02 8.954529e-02 2 61483092 61483122 31 - 0.140 0.544 2.711
ENSG00000082898 E024 691.3258328 9.308227e-05 6.091053e-06 4.253185e-05 2 61483937 61484105 169 - 2.680 2.795 0.382
ENSG00000082898 E025 10.5516188 1.637029e-03 6.799423e-01 7.839921e-01 2 61484106 61485767 1662 - 0.923 1.007 0.312
ENSG00000082898 E026 672.8441598 9.533359e-05 6.153147e-05 3.390226e-04 2 61485768 61485962 195 - 2.670 2.777 0.355
ENSG00000082898 E027 5.8653481 2.713060e-02 8.825845e-01 9.288487e-01 2 61485963 61487541 1579 - 0.716 0.714 -0.010
ENSG00000082898 E028 359.5746280 1.134359e-03 1.158754e-02 3.255511e-02 2 61488165 61488213 49 - 2.400 2.507 0.358
ENSG00000082898 E029 358.9241062 1.081934e-03 1.082161e-01 2.029019e-01 2 61488214 61488271 58 - 2.403 2.483 0.268
ENSG00000082898 E030 216.0516986 2.319203e-04 5.001598e-01 6.364268e-01 2 61488588 61488590 3 - 2.188 2.243 0.186
ENSG00000082898 E031 609.0283509 9.551309e-04 7.874473e-01 8.638773e-01 2 61488591 61488771 181 - 2.638 2.679 0.135
ENSG00000082898 E032 1.7423479 8.282438e-03 2.620390e-01 3.997592e-01 2 61488772 61488932 161 - 0.305 0.544 1.295
ENSG00000082898 E033 480.5809029 4.201153e-03 3.077561e-01 4.499940e-01 2 61490642 61490776 135 - 2.543 2.539 -0.013
ENSG00000082898 E034 569.4025546 2.575426e-03 4.989851e-01 6.353450e-01 2 61492035 61492196 162 - 2.614 2.627 0.042
ENSG00000082898 E035 185.5100332 1.398278e-02 7.582392e-01 8.428800e-01 2 61492197 61492198 2 - 2.123 2.176 0.177
ENSG00000082898 E036 2.0534085 5.617907e-02 9.213406e-02 1.784479e-01 2 61492199 61492250 52 - 0.444 0.000 -11.766
ENSG00000082898 E037 567.2911675 5.937420e-03 1.191973e-01 2.187869e-01 2 61492325 61492481 157 - 2.619 2.590 -0.097
ENSG00000082898 E038 652.7491653 4.473616e-03 1.226717e-03 4.731323e-03 2 61492567 61492748 182 - 2.688 2.600 -0.291
ENSG00000082898 E039 1.9282064 8.581905e-03 3.982545e-01 5.419851e-01 2 61492749 61492914 166 - 0.356 0.543 0.971
ENSG00000082898 E040 689.3176238 1.526399e-02 7.542237e-05 4.062823e-04 2 61492915 61493053 139 - 2.726 2.516 -0.700
ENSG00000082898 E041 8.1610308 2.077096e-03 4.360822e-02 9.765995e-02 2 61493054 61493637 584 - 0.874 0.544 -1.377
ENSG00000082898 E042 5.0577372 3.481765e-03 3.807573e-01 5.250528e-01 2 61493638 61493893 256 - 0.683 0.544 -0.611
ENSG00000082898 E043 679.7818017 2.256939e-02 2.181467e-03 7.784410e-03 2 61493894 61494091 198 - 2.717 2.533 -0.614
ENSG00000082898 E044 9.9817421 1.653385e-03 2.138986e-01 3.431284e-01 2 61494092 61495454 1363 - 0.936 0.778 -0.611
ENSG00000082898 E045 601.9001908 1.200235e-04 5.153177e-24 5.119318e-22 2 61495455 61495613 159 - 2.665 2.467 -0.659
ENSG00000082898 E046 512.0385177 4.081699e-03 2.023813e-09 2.828933e-08 2 61496879 61496960 82 - 2.597 2.389 -0.692
ENSG00000082898 E047 425.0895522 1.491526e-04 1.243598e-18 6.783643e-17 2 61496961 61497007 47 - 2.516 2.308 -0.693
ENSG00000082898 E048 6.2808084 2.545566e-03 1.577180e-01 2.720867e-01 2 61497008 61498672 1665 - 0.775 0.544 -0.990
ENSG00000082898 E049 406.6826176 4.054953e-04 2.341551e-17 1.087788e-15 2 61498673 61498739 67 - 2.498 2.283 -0.717
ENSG00000082898 E050 301.8659907 2.520865e-04 1.063432e-12 2.597524e-11 2 61498740 61498792 53 - 2.367 2.169 -0.663
ENSG00000082898 E051 14.9011904 3.142880e-03 3.062182e-02 7.318294e-02 2 61498793 61498864 72 - 1.104 0.834 -1.005
ENSG00000082898 E052 281.7538847 5.519203e-04 6.470236e-08 6.817770e-07 2 61498865 61498913 49 - 2.332 2.181 -0.503
ENSG00000082898 E053 557.6946850 1.347057e-04 1.915366e-21 1.443933e-19 2 61499713 61499894 182 - 2.632 2.439 -0.641
ENSG00000082898 E054 3.9158363 5.848388e-03 6.955927e-01 7.961619e-01 2 61499895 61500568 674 - 0.594 0.544 -0.228
ENSG00000082898 E055 202.8083658 1.904548e-04 2.076330e-13 5.641916e-12 2 61501996 61502005 10 - 2.202 1.938 -0.885
ENSG00000082898 E056 295.7280918 2.042566e-04 2.040501e-24 2.110081e-22 2 61502006 61502040 35 - 2.370 2.045 -1.085
ENSG00000082898 E057 1.4122366 2.415613e-01 8.830574e-01 9.291709e-01 2 61502146 61502248 103 - 0.305 0.266 -0.269
ENSG00000082898 E058 355.0677146 3.118776e-04 3.853445e-29 6.008425e-27 2 61502249 61502289 41 - 2.450 2.114 -1.119
ENSG00000082898 E059 288.8109365 1.977659e-04 2.259102e-21 1.690285e-19 2 61502290 61502310 21 - 2.357 2.058 -0.999
ENSG00000082898 E060 1.5617894 2.003203e-02 7.062393e-01 8.044283e-01 2 61502311 61502608 298 - 0.331 0.263 -0.458
ENSG00000082898 E061 1.1457494 1.124910e-02 8.876079e-03 2.597023e-02 2 61510623 61510929 307 - 0.140 0.636 3.125
ENSG00000082898 E062 0.1451727 4.307053e-02 9.536083e-01   2 61514062 61514200 139 - 0.052 0.000 -8.095
ENSG00000082898 E063 0.4439371 2.156680e-02 1.000000e+00 1.000000e+00 2 61514201 61514982 782 - 0.140 0.000 -9.913
ENSG00000082898 E064 0.1451727 4.307053e-02 9.536083e-01   2 61520391 61520475 85 - 0.052 0.000 -8.095
ENSG00000082898 E065 412.0816899 9.114748e-03 1.841347e-10 3.104090e-09 2 61522611 61522683 73 - 2.513 2.189 -1.081
ENSG00000082898 E066 21.3434862 2.032959e-02 5.071334e-05 2.853767e-04 2 61522684 61523690 1007 - 1.272 0.637 -2.409
ENSG00000082898 E067 5.9905768 2.682126e-03 1.935241e-01 3.182099e-01 2 61525270 61525333 64 - 0.756 0.544 -0.914
ENSG00000082898 E068 3.4339992 1.092047e-01 3.606444e-02 8.370969e-02 2 61525334 61525491 158 - 0.595 0.000 -12.214
ENSG00000082898 E069 6.0784801 2.691458e-03 7.776784e-04 3.178821e-03 2 61525492 61525559 68 - 0.793 0.000 -13.780
ENSG00000082898 E070 10.8973823 7.143555e-03 1.405733e-04 7.060045e-04 2 61525560 61526066 507 - 1.007 0.263 -3.459
ENSG00000082898 E071 4.9342101 7.658664e-03 3.239313e-02 7.661590e-02 2 61526067 61526150 84 - 0.705 0.263 -2.288
ENSG00000082898 E072 6.7945511 3.576137e-03 4.982023e-03 1.588002e-02 2 61526151 61526419 269 - 0.828 0.263 -2.782
ENSG00000082898 E073 342.4376535 1.500656e-02 1.733607e-07 1.682513e-06 2 61526420 61526461 42 - 2.433 2.108 -1.085
ENSG00000082898 E074 308.7170623 1.213516e-02 1.758040e-08 2.071755e-07 2 61526462 61526505 44 - 2.389 2.057 -1.108
ENSG00000082898 E075 221.2743947 1.795519e-04 5.930602e-24 5.867022e-22 2 61526506 61526521 16 - 2.249 1.861 -1.301
ENSG00000082898 E076 2.5592482 5.838823e-03 2.800116e-01 4.198113e-01 2 61526522 61526523 2 - 0.482 0.263 -1.290
ENSG00000082898 E077 0.3729606 2.893824e-02 1.920313e-01 3.162961e-01 2 61529066 61529159 94 - 0.052 0.263 2.713
ENSG00000082898 E078 362.0014971 1.191383e-02 1.345899e-10 2.326215e-09 2 61533772 61533903 132 - 2.462 2.082 -1.267
ENSG00000082898 E079 8.4806937 1.960669e-03 4.152863e-01 5.586749e-01 2 61533904 61534422 519 - 0.828 0.970 0.540
ENSG00000082898 E080 4.5924826 3.341786e-02 2.083135e-01 3.364654e-01 2 61534423 61534518 96 - 0.671 0.425 -1.148
ENSG00000082898 E081 3.4206057 7.948060e-03 4.285139e-01 5.712564e-01 2 61534519 61534557 39 - 0.565 0.426 -0.682
ENSG00000082898 E082 8.0994183 1.979308e-03 1.244650e-01 2.263432e-01 2 61534558 61534654 97 - 0.867 0.636 -0.934
ENSG00000082898 E083 4.6724819 9.301199e-03 8.414220e-01 9.011016e-01 2 61534655 61534678 24 - 0.647 0.636 -0.046
ENSG00000082898 E084 32.8325906 2.961013e-03 7.457141e-01 8.336724e-01 2 61534679 61536201 1523 - 1.383 1.442 0.203
ENSG00000082898 E085 17.0145340 7.432277e-03 5.614674e-01 6.892845e-01 2 61536202 61536588 387 - 1.108 1.204 0.341
ENSG00000082898 E086 7.3802573 6.002503e-02 3.076332e-01 4.498664e-01 2 61536710 61536869 160 - 0.766 0.969 0.782
ENSG00000082898 E087 7.7456301 1.303537e-01 3.706730e-01 5.150873e-01 2 61536870 61537018 149 - 0.784 0.999 0.819
ENSG00000082898 E088 3.3464200 8.570581e-03 6.068719e-01 7.269404e-01 2 61537019 61537117 99 - 0.517 0.636 0.541
ENSG00000082898 E089 191.4665958 2.949526e-02 1.469110e-04 7.337472e-04 2 61537562 61537587 26 - 2.183 1.851 -1.117
ENSG00000082898 E090 237.3508237 3.483787e-02 6.443758e-04 2.695766e-03 2 61537588 61537668 81 - 2.274 1.967 -1.028
ENSG00000082898 E091 159.5357553 3.380264e-02 3.132036e-03 1.065384e-02 2 61537669 61537743 75 - 2.099 1.832 -0.897
ENSG00000082898 E092 154.0977892 1.247186e-02 2.273943e-05 1.391311e-04 2 61537744 61538069 326 - 2.086 1.803 -0.948
ENSG00000082898 E093 77.4434903 1.142934e-02 3.244756e-02 7.671401e-02 2 61538070 61538137 68 - 1.777 1.637 -0.474
ENSG00000082898 E094 89.0516290 7.838416e-03 7.792155e-03 2.325531e-02 2 61538138 61538191 54 - 1.838 1.678 -0.541
ENSG00000082898 E095 96.9783387 9.397299e-03 1.111217e-02 3.143590e-02 2 61538192 61538356 165 - 1.874 1.721 -0.517
ENSG00000082898 E096 9.3576063 3.150269e-03 6.279076e-01 7.435809e-01 2 61538492 61538741 250 - 0.874 0.970 0.361