ENSG00000082397

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000342933 ENSG00000082397 HEK293_OSMI2_2hA HEK293_TMG_2hB EPB41L3 protein_coding protein_coding 15.75752 9.707148 26.12438 0.8092477 0.6666948 1.427344 0.3941686 0.9202492 0.2624444 0.1841105 0.08374604 -1.7716557 0.03516667 0.0936 0.0099000 -0.08370000 7.952523e-08 2.718111e-17 FALSE TRUE
ENST00000540638 ENSG00000082397 HEK293_OSMI2_2hA HEK293_TMG_2hB EPB41L3 protein_coding protein_coding 15.75752 9.707148 26.12438 0.8092477 0.6666948 1.427344 1.7726614 0.0000000 3.9294676 0.0000000 0.42844460 8.6218568 0.08767500 0.0000 0.1513000 0.15130000 2.718111e-17 2.718111e-17 FALSE TRUE
ENST00000542652 ENSG00000082397 HEK293_OSMI2_2hA HEK293_TMG_2hB EPB41L3 protein_coding processed_transcript 15.75752 9.707148 26.12438 0.8092477 0.6666948 1.427344 6.9515197 6.6022528 9.8821393 0.6964871 0.53609567 0.5811407 0.48449167 0.6780 0.3798333 -0.29816667 1.462989e-06 2.718111e-17 FALSE TRUE
ENST00000581292 ENSG00000082397 HEK293_OSMI2_2hA HEK293_TMG_2hB EPB41L3 protein_coding protein_coding 15.75752 9.707148 26.12438 0.8092477 0.6666948 1.427344 0.8385455 0.0000000 1.7290775 0.0000000 0.90663900 7.4421784 0.04884583 0.0000 0.0646000 0.06460000 2.938730e-01 2.718111e-17 FALSE FALSE
MSTRG.15453.14 ENSG00000082397 HEK293_OSMI2_2hA HEK293_TMG_2hB EPB41L3 protein_coding   15.75752 9.707148 26.12438 0.8092477 0.6666948 1.427344 0.7989292 0.1123629 2.7146975 0.1123629 0.78213852 4.4768576 0.03791667 0.0107 0.1025667 0.09186667 4.978209e-02 2.718111e-17 FALSE TRUE
MSTRG.15453.8 ENSG00000082397 HEK293_OSMI2_2hA HEK293_TMG_2hB EPB41L3 protein_coding   15.75752 9.707148 26.12438 0.8092477 0.6666948 1.427344 2.8633234 0.9441958 4.6225220 0.1652811 0.66811982 2.2794405 0.17240417 0.0994 0.1760667 0.07666667 1.616201e-01 2.718111e-17 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000082397 E001 0.4772466 0.0204905838 2.290148e-01 3.612593e-01 18 5392381 5392385 5 - 0.088 0.288 2.070
ENSG00000082397 E002 20.3905294 0.0009532581 1.477074e-10 2.533060e-09 18 5392386 5392432 47 - 1.079 1.566 1.703
ENSG00000082397 E003 32.8921382 0.0006522844 7.400394e-19 4.150333e-17 18 5392433 5392444 12 - 1.240 1.784 1.869
ENSG00000082397 E004 185.9270629 0.0017007712 7.564451e-28 1.057611e-25 18 5392445 5392848 404 - 2.099 2.447 1.164
ENSG00000082397 E005 128.5916788 0.0002700829 4.203528e-16 1.666693e-14 18 5392849 5392987 139 - 1.988 2.245 0.861
ENSG00000082397 E006 88.1791219 0.0003313725 2.391462e-14 7.438110e-13 18 5392988 5393039 52 - 1.807 2.097 0.975
ENSG00000082397 E007 73.3414949 0.0003541549 1.697773e-12 4.005953e-11 18 5393040 5393092 53 - 1.727 2.020 0.988
ENSG00000082397 E008 42.7539083 0.0005771882 3.955647e-11 7.463998e-10 18 5393093 5393102 10 - 1.460 1.817 1.215
ENSG00000082397 E009 46.7983488 0.0007400156 1.532381e-12 3.642471e-11 18 5393103 5393133 31 - 1.493 1.861 1.253
ENSG00000082397 E010 63.6486059 0.0003739317 7.823462e-10 1.183717e-08 18 5393134 5393163 30 - 1.676 1.950 0.924
ENSG00000082397 E011 212.3817251 0.0002456715 9.572771e-04 3.812586e-03 18 5393164 5393478 315 - 2.283 2.367 0.282
ENSG00000082397 E012 16.1299273 0.0184982219 1.167113e-02 3.275015e-02 18 5393479 5394676 1198 - 1.298 1.002 -1.062
ENSG00000082397 E013 99.9688822 0.0003182915 4.693994e-01 6.086409e-01 18 5394677 5394782 106 - 2.002 1.977 -0.084
ENSG00000082397 E014 50.6034270 0.0004693016 4.765949e-02 1.050134e-01 18 5394783 5394793 11 - 1.736 1.633 -0.348
ENSG00000082397 E015 5.6571495 0.0028831215 5.611824e-01 6.890507e-01 18 5394794 5395066 273 - 0.835 0.757 -0.307
ENSG00000082397 E016 120.7523104 0.0002453029 8.810428e-02 1.722430e-01 18 5395067 5395147 81 - 2.092 2.036 -0.189
ENSG00000082397 E017 129.3890559 0.0002885859 1.550638e-01 2.684922e-01 18 5395609 5395707 99 - 2.117 2.072 -0.152
ENSG00000082397 E018 136.8908405 0.0002873534 4.944148e-01 6.313557e-01 18 5396201 5396332 132 - 2.135 2.115 -0.067
ENSG00000082397 E019 101.9387083 0.0003120536 6.704068e-01 7.768603e-01 18 5397058 5397157 100 - 1.993 2.010 0.057
ENSG00000082397 E020 98.7645368 0.0021225772 3.591620e-01 5.034976e-01 18 5397158 5397247 90 - 1.970 2.009 0.133
ENSG00000082397 E021 126.3274960 0.0002514216 5.937647e-01 7.160759e-01 18 5397248 5397392 145 - 2.083 2.102 0.063
ENSG00000082397 E022 58.4605542 0.0033016348 3.483116e-01 4.925364e-01 18 5397393 5397394 2 - 1.741 1.794 0.177
ENSG00000082397 E023 58.4615097 0.0015389350 1.856356e-01 3.082877e-01 18 5397395 5397397 3 - 1.736 1.804 0.230
ENSG00000082397 E024 73.9826677 0.0005777302 5.230652e-01 6.568114e-01 18 5397398 5397426 29 - 1.851 1.881 0.098
ENSG00000082397 E025 1.1919493 0.0150913666 2.002051e-01 3.264909e-01 18 5398021 5398112 92 - 0.410 0.168 -1.738
ENSG00000082397 E026 1.3651209 0.0096686116 5.069742e-01 6.426025e-01 18 5398113 5398143 31 - 0.410 0.288 -0.737
ENSG00000082397 E027 1.1437748 0.0108175830 8.350487e-01 8.967691e-01 18 5398144 5398650 507 - 0.327 0.289 -0.249
ENSG00000082397 E028 0.5954526 0.0172671820 1.630081e-01 2.790632e-01 18 5398651 5399385 735 - 0.278 0.000 -13.840
ENSG00000082397 E029 0.2924217 0.0273059246 4.974858e-01   18 5399386 5400496 1111 - 0.161 0.000 -12.840
ENSG00000082397 E030 1.0287806 0.0120453303 3.943956e-02 8.999454e-02 18 5400497 5400595 99 - 0.410 0.000 -14.647
ENSG00000082397 E031 0.2987644 0.0273244649 4.970561e-01   18 5400596 5400868 273 - 0.161 0.000 -12.840
ENSG00000082397 E032 0.1472490 0.0439652685 1.000000e+00   18 5400869 5400968 100 - 0.088 0.000 -11.840
ENSG00000082397 E033 2.4700853 0.0228578597 9.257988e-01 9.572799e-01 18 5400969 5400996 28 - 0.540 0.526 -0.069
ENSG00000082397 E034 1.6951064 0.1948251468 4.319095e-01 5.744007e-01 18 5400997 5401043 47 - 0.480 0.290 -1.092
ENSG00000082397 E035 1.1833147 0.0798692711 8.206398e-01 8.868944e-01 18 5406765 5406776 12 - 0.327 0.380 0.316
ENSG00000082397 E036 96.0398602 0.0003247608 5.663134e-01 6.933017e-01 18 5406777 5406847 71 - 1.967 1.990 0.078
ENSG00000082397 E037 116.5415495 0.0002923053 2.072881e-01 3.352552e-01 18 5406848 5406968 121 - 2.073 2.032 -0.140
ENSG00000082397 E038 0.7490443 0.0852833324 1.162976e-01 2.146826e-01 18 5406969 5407328 360 - 0.327 0.000 -14.164
ENSG00000082397 E039 0.1451727 0.0437854575 1.000000e+00   18 5407701 5407736 36 - 0.088 0.000 -11.840
ENSG00000082397 E040 78.2198200 0.0004638561 7.865193e-04 3.211010e-03 18 5410566 5410619 54 - 1.933 1.788 -0.488
ENSG00000082397 E041 0.0000000       18 5415818 5416378 561 -      
ENSG00000082397 E042 103.6334001 0.0003148503 6.503450e-05 3.560864e-04 18 5419711 5419798 88 - 2.054 1.904 -0.502
ENSG00000082397 E043 93.1826227 0.0003252496 9.979227e-05 5.208658e-04 18 5419799 5419877 79 - 2.010 1.856 -0.517
ENSG00000082397 E044 64.6827797 0.0004167695 9.901435e-02 1.889648e-01 18 5419878 5419931 54 - 1.829 1.753 -0.256
ENSG00000082397 E045 0.0000000       18 5420042 5420206 165 -      
ENSG00000082397 E046 112.9736625 0.0011401904 4.504688e-02 1.002855e-01 18 5423378 5423553 176 - 2.069 1.994 -0.253
ENSG00000082397 E047 75.2720164 0.0006233876 2.663046e-01 4.044786e-01 18 5424262 5424359 98 - 1.883 1.835 -0.161
ENSG00000082397 E048 100.3826690 0.0003034256 1.849167e-04 8.988980e-04 18 5428313 5428465 153 - 2.036 1.894 -0.478
ENSG00000082397 E049 0.0000000       18 5429248 5429385 138 -      
ENSG00000082397 E050 0.1451727 0.0437854575 1.000000e+00   18 5431212 5431385 174 - 0.088 0.000 -11.840
ENSG00000082397 E051 80.8682920 0.0004004117 9.311094e-07 7.778282e-06 18 5433469 5433556 88 - 1.963 1.750 -0.720
ENSG00000082397 E052 130.6757149 0.0002820849 2.313524e-07 2.191451e-06 18 5433903 5434121 219 - 2.160 1.986 -0.585
ENSG00000082397 E053 72.2890686 0.0003572460 3.725778e-02 8.596452e-02 18 5438035 5438110 76 - 1.882 1.791 -0.306
ENSG00000082397 E054 61.2501884 0.0037648894 3.670382e-02 8.491285e-02 18 5443838 5443880 43 - 1.819 1.699 -0.403
ENSG00000082397 E055 87.1361182 0.0023095162 4.944126e-04 2.138616e-03 18 5445140 5445244 105 - 1.982 1.817 -0.554
ENSG00000082397 E056 0.0000000       18 5466300 5466363 64 -      
ENSG00000082397 E057 40.3311784 0.0029864701 2.961160e-03 1.014784e-02 18 5478241 5478246 6 - 1.662 1.467 -0.666
ENSG00000082397 E058 50.5252676 0.0064950621 2.860762e-02 6.922603e-02 18 5478247 5478271 25 - 1.743 1.595 -0.504
ENSG00000082397 E059 44.3726695 0.0062990611 9.660782e-02 1.852726e-01 18 5478272 5478282 11 - 1.678 1.562 -0.397
ENSG00000082397 E060 62.9328581 0.0007766573 2.419279e-04 1.141418e-03 18 5478283 5478349 67 - 1.847 1.666 -0.615
ENSG00000082397 E061 38.5927372 0.0005139413 3.076345e-06 2.295590e-05 18 5478350 5478353 4 - 1.670 1.374 -1.016
ENSG00000082397 E062 48.8541348 0.0004542957 4.477497e-07 3.998719e-06 18 5478354 5478382 29 - 1.767 1.481 -0.975
ENSG00000082397 E063 36.1255936 0.0005693933 1.142465e-04 5.873608e-04 18 5478383 5478398 16 - 1.631 1.382 -0.853
ENSG00000082397 E064 41.1279615 0.0058142570 3.540814e-05 2.067552e-04 18 5478399 5478438 40 - 1.697 1.399 -1.020
ENSG00000082397 E065 0.0000000       18 5480070 5480123 54 -      
ENSG00000082397 E066 0.0000000       18 5488813 5488861 49 -      
ENSG00000082397 E067 0.1482932 0.0411222389 2.329667e-01   18 5488862 5489000 139 - 0.000 0.167 13.705
ENSG00000082397 E068 55.1750736 0.0097519767 1.469144e-04 7.337472e-04 18 5489001 5489161 161 - 1.816 1.542 -0.930
ENSG00000082397 E069 24.2818828 0.0033860149 8.197832e-04 3.330091e-03 18 5489162 5489194 33 - 1.470 1.194 -0.964
ENSG00000082397 E070 0.0000000       18 5489195 5489250 56 -      
ENSG00000082397 E071 0.4502799 0.0308442578 2.786850e-01 4.183455e-01 18 5489271 5489370 100 - 0.224 0.000 -13.426
ENSG00000082397 E072 0.0000000       18 5508165 5508278 114 -      
ENSG00000082397 E073 0.0000000       18 5518525 5518607 83 -      
ENSG00000082397 E074 0.0000000       18 5521258 5521423 166 -      
ENSG00000082397 E075 0.0000000       18 5528951 5528999 49 -      
ENSG00000082397 E076 0.2924217 0.0273059246 4.974858e-01   18 5539621 5539698 78 - 0.161 0.000 -12.840
ENSG00000082397 E077 0.0000000       18 5540340 5540556 217 -      
ENSG00000082397 E078 0.4439371 0.0215550780 2.765163e-01 4.159799e-01 18 5543313 5543420 108 - 0.224 0.000 -13.425
ENSG00000082397 E079 26.2250414 0.0032745408 4.461656e-05 2.544163e-04 18 5543913 5544310 398 - 1.514 1.180 -1.162
ENSG00000082397 E080 0.0000000       18 5577330 5577648 319 -      
ENSG00000082397 E081 0.0000000       18 5612340 5612428 89 -      
ENSG00000082397 E082 0.1451727 0.0437854575 1.000000e+00   18 5614351 5614423 73 - 0.088 0.000 -11.840
ENSG00000082397 E083 0.1451727 0.0437854575 1.000000e+00   18 5628922 5628991 70 - 0.088 0.000 -11.840
ENSG00000082397 E084 18.5066454 0.0010061152 4.183601e-01 5.616409e-01 18 5630377 5630700 324 - 1.298 1.231 -0.234