ENSG00000079616

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000160827 ENSG00000079616 HEK293_OSMI2_2hA HEK293_TMG_2hB KIF22 protein_coding protein_coding 111.1041 172.3072 75.12063 5.086158 1.949695 -1.197593 72.636920 131.271384 40.32642 3.343755 0.278016 -1.7025074 0.6170167 0.7621667 0.5374333 -0.22473333 1.519234e-15 1.519234e-15 FALSE TRUE
ENST00000565736 ENSG00000079616 HEK293_OSMI2_2hA HEK293_TMG_2hB KIF22 protein_coding retained_intron 111.1041 172.3072 75.12063 5.086158 1.949695 -1.197593 9.333744 8.836386 7.56367 1.758055 1.282098 -0.2240957 0.0919000 0.0518000 0.1012333 0.04943333 1.370067e-01 1.519234e-15 FALSE TRUE
ENST00000691169 ENSG00000079616 HEK293_OSMI2_2hA HEK293_TMG_2hB KIF22 protein_coding retained_intron 111.1041 172.3072 75.12063 5.086158 1.949695 -1.197593 12.920130 14.957046 13.08711 2.187750 1.359261 -0.1925412 0.1303833 0.0862000 0.1736333 0.08743333 1.252825e-03 1.519234e-15 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000079616 E001 2.5539300 1.201802e-01 5.348614e-01 6.668502e-01 16 29790727 29790728 2 + 0.567 0.452 -0.554
ENSG00000079616 E002 2.8839275 3.489987e-02 7.259615e-01 8.191014e-01 16 29790729 29790730 2 + 0.566 0.504 -0.294
ENSG00000079616 E003 2.8839275 3.489987e-02 7.259615e-01 8.191014e-01 16 29790731 29790731 1 + 0.566 0.504 -0.294
ENSG00000079616 E004 3.7299675 9.928321e-02 8.958522e-01 9.374479e-01 16 29790732 29790733 2 + 0.567 0.609 0.190
ENSG00000079616 E005 20.5005522 2.911800e-02 3.359901e-01 4.798078e-01 16 29790734 29790739 6 + 1.330 1.226 -0.364
ENSG00000079616 E006 20.5005522 2.911800e-02 3.359901e-01 4.798078e-01 16 29790740 29790740 1 + 1.330 1.226 -0.364
ENSG00000079616 E007 22.8652151 1.925204e-02 3.144687e-01 4.571767e-01 16 29790741 29790742 2 + 1.372 1.272 -0.347
ENSG00000079616 E008 33.2010657 2.233620e-02 2.444676e-01 3.794242e-01 16 29790743 29790747 5 + 1.535 1.428 -0.368
ENSG00000079616 E009 34.9984799 2.287878e-02 1.964254e-01 3.217546e-01 16 29790748 29790749 2 + 1.567 1.447 -0.414
ENSG00000079616 E010 36.1745200 2.273270e-02 1.430940e-01 2.522447e-01 16 29790750 29790750 1 + 1.592 1.456 -0.464
ENSG00000079616 E011 40.5559565 1.952959e-02 3.770516e-02 8.677693e-02 16 29790751 29790753 3 + 1.673 1.491 -0.622
ENSG00000079616 E012 68.0623424 3.880104e-04 1.944936e-01 3.193883e-01 16 29790754 29790755 2 + 1.812 1.747 -0.219
ENSG00000079616 E013 69.3908404 3.719221e-04 2.044903e-01 3.317892e-01 16 29790756 29790756 1 + 1.819 1.756 -0.212
ENSG00000079616 E014 413.0670877 3.972929e-03 1.194159e-01 2.191109e-01 16 29790757 29790829 73 + 2.585 2.528 -0.188
ENSG00000079616 E015 0.1472490 4.284791e-02 1.759668e-01   16 29790968 29790970 3 + 0.187 0.000 -10.042
ENSG00000079616 E016 0.6986918 1.726718e-02 9.509700e-01 9.733347e-01 16 29790971 29791006 36 + 0.187 0.202 0.142
ENSG00000079616 E017 2.6851085 5.748023e-03 4.470414e-01 5.884719e-01 16 29791007 29791221 215 + 0.417 0.552 0.671
ENSG00000079616 E018 2.6861407 8.885703e-03 8.596877e-01 9.134953e-01 16 29791222 29791461 240 + 0.498 0.527 0.140
ENSG00000079616 E019 4.5383471 1.250101e-02 1.093949e-01 2.046686e-01 16 29792466 29792514 49 + 0.839 0.599 -0.990
ENSG00000079616 E020 545.8377883 2.368160e-03 4.154380e-02 9.389582e-02 16 29796893 29796945 53 + 2.708 2.648 -0.199
ENSG00000079616 E021 999.3613327 1.316347e-03 6.758071e-02 1.393353e-01 16 29796946 29797088 143 + 2.956 2.916 -0.131
ENSG00000079616 E022 1.9239480 7.949110e-03 4.987509e-01 6.351556e-01 16 29797089 29797093 5 + 0.317 0.443 0.726
ENSG00000079616 E023 1009.2524555 5.592083e-04 1.181643e-01 2.173047e-01 16 29798374 29798501 128 + 2.950 2.923 -0.091
ENSG00000079616 E024 439.1341641 1.549221e-04 6.423361e-01 7.551490e-01 16 29798593 29798597 5 + 2.577 2.565 -0.038
ENSG00000079616 E025 933.9522942 2.946956e-04 5.503272e-01 6.799750e-01 16 29798598 29798747 150 + 2.904 2.893 -0.036
ENSG00000079616 E026 10.6825847 1.647554e-03 4.925095e-07 4.360633e-06 16 29798748 29798974 227 + 1.330 0.827 -1.834
ENSG00000079616 E027 1279.8794848 1.528246e-03 3.845400e-01 5.286818e-01 16 29798975 29799184 210 + 3.047 3.029 -0.061
ENSG00000079616 E028 1744.9787091 2.202357e-04 1.129073e-01 2.097815e-01 16 29799264 29799494 231 + 3.183 3.163 -0.065
ENSG00000079616 E029 17.8274534 1.194162e-03 6.589474e-08 6.934156e-07 16 29799495 29799627 133 + 1.500 1.059 -1.549
ENSG00000079616 E030 1424.8655961 5.110781e-04 3.551337e-02 8.264119e-02 16 29799628 29799781 154 + 3.057 3.088 0.100
ENSG00000079616 E031 754.4821092 1.650099e-04 9.480805e-06 6.336625e-05 16 29799913 29799960 48 + 2.750 2.819 0.232
ENSG00000079616 E032 1143.2173263 4.335971e-04 7.204826e-07 6.171140e-06 16 29799961 29800048 88 + 2.924 3.001 0.254
ENSG00000079616 E033 23.1870966 7.845920e-04 7.993250e-13 1.994766e-11 16 29800049 29800173 125 + 1.643 1.128 -1.788
ENSG00000079616 E034 94.3975388 1.498320e-03 9.631276e-27 1.213983e-24 16 29800174 29801346 1173 + 2.198 1.758 -1.478
ENSG00000079616 E035 94.5295549 2.026609e-03 3.624331e-41 1.343676e-38 16 29801347 29802316 970 + 2.265 1.701 -1.895
ENSG00000079616 E036 25.6672775 3.814256e-03 1.759933e-06 1.385703e-05 16 29802317 29802472 156 + 1.604 1.249 -1.227
ENSG00000079616 E037 13.6622047 1.799529e-02 1.617171e-04 7.993744e-04 16 29802473 29802507 35 + 1.381 0.973 -1.457
ENSG00000079616 E038 9.2958222 6.602673e-03 2.859009e-06 2.149584e-05 16 29802508 29802510 3 + 1.284 0.772 -1.890
ENSG00000079616 E039 36.9680808 6.303982e-04 4.646960e-14 1.385291e-12 16 29802511 29802665 155 + 1.801 1.360 -1.507
ENSG00000079616 E040 20.7423150 1.194286e-03 3.292106e-06 2.443120e-05 16 29802666 29802689 24 + 1.514 1.153 -1.260
ENSG00000079616 E041 30.4200186 8.473668e-04 1.321723e-05 8.536215e-05 16 29802690 29802768 79 + 1.627 1.337 -0.996
ENSG00000079616 E042 1079.5025343 8.511470e-05 1.891772e-03 6.888945e-03 16 29802769 29802847 79 + 2.929 2.967 0.128
ENSG00000079616 E043 1200.7852406 6.958181e-05 4.732739e-03 1.518560e-02 16 29802848 29802937 90 + 2.980 3.013 0.108
ENSG00000079616 E044 24.1290301 7.707674e-04 1.375200e-11 2.801974e-10 16 29802938 29803398 461 + 1.643 1.165 -1.657
ENSG00000079616 E045 27.6596482 1.109429e-02 4.863781e-03 1.555180e-02 16 29803399 29803448 50 + 1.549 1.309 -0.827
ENSG00000079616 E046 1682.0127307 7.300167e-04 2.225107e-03 7.921596e-03 16 29803449 29803608 160 + 3.115 3.164 0.163
ENSG00000079616 E047 872.1102983 1.676735e-03 7.948591e-03 2.364879e-02 16 29803998 29804002 5 + 2.818 2.882 0.214
ENSG00000079616 E048 1340.0873526 1.481608e-03 2.791778e-04 1.295039e-03 16 29804003 29804065 63 + 2.993 3.071 0.260
ENSG00000079616 E049 110.6658749 2.636062e-04 4.629263e-30 7.837354e-28 16 29804066 29804107 42 + 2.241 1.843 -1.336
ENSG00000079616 E050 442.0758106 4.270828e-03 4.230577e-22 3.404716e-20 16 29804108 29804575 468 + 2.811 2.465 -1.152
ENSG00000079616 E051 218.2530949 6.969872e-03 1.358856e-10 2.347326e-09 16 29804576 29804693 118 + 2.480 2.177 -1.013
ENSG00000079616 E052 171.3860415 6.361444e-03 7.497392e-07 6.398011e-06 16 29804694 29804726 33 + 2.335 2.097 -0.795
ENSG00000079616 E053 224.7287394 2.014632e-03 1.544979e-04 7.670114e-04 16 29804727 29804813 87 + 2.376 2.246 -0.433
ENSG00000079616 E054 2056.5743281 6.639450e-04 2.408975e-14 7.487662e-13 16 29804814 29805026 213 + 3.150 3.264 0.379
ENSG00000079616 E055 34.3985988 5.881557e-04 1.007397e-03 3.984045e-03 16 29805027 29805114 88 + 1.627 1.416 -0.721
ENSG00000079616 E056 873.8972084 2.508037e-04 9.789436e-14 2.787165e-12 16 29805115 29805174 60 + 2.774 2.893 0.396
ENSG00000079616 E057 26.7895515 1.296281e-03 9.073026e-02 1.762877e-01 16 29805175 29805262 88 + 1.461 1.333 -0.442
ENSG00000079616 E058 566.0983282 5.412600e-04 1.004837e-09 1.489775e-08 16 29805263 29805905 643 + 2.578 2.707 0.428