ENSG00000078674

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000325083 ENSG00000078674 HEK293_OSMI2_2hA HEK293_TMG_2hB PCM1 protein_coding protein_coding 16.43441 5.102971 22.85721 0.225636 0.3658599 2.161047 2.4433193 0.74950038 3.16767599 0.37733208 0.954647383 2.0648494 0.12203333 0.146366667 0.137966667 -0.00840000 9.350891e-01 7.3027e-18 FALSE TRUE
ENST00000517836 ENSG00000078674 HEK293_OSMI2_2hA HEK293_TMG_2hB PCM1 protein_coding retained_intron 16.43441 5.102971 22.85721 0.225636 0.3658599 2.161047 1.5403689 0.21223051 1.04484229 0.21223051 0.524414526 2.2468985 0.06260000 0.038266667 0.045766667 0.00750000 7.648789e-01 7.3027e-18 FALSE TRUE
ENST00000521338 ENSG00000078674 HEK293_OSMI2_2hA HEK293_TMG_2hB PCM1 protein_coding retained_intron 16.43441 5.102971 22.85721 0.225636 0.3658599 2.161047 0.6525467 0.30754765 0.45653484 0.10095970 0.235485589 0.5550117 0.06210000 0.060133333 0.019766667 -0.04036667 5.226296e-01 7.3027e-18 FALSE FALSE
ENST00000522275 ENSG00000078674 HEK293_OSMI2_2hA HEK293_TMG_2hB PCM1 protein_coding protein_coding 16.43441 5.102971 22.85721 0.225636 0.3658599 2.161047 0.7843674 1.33330955 0.09994113 0.31420425 0.001604006 -3.6109887 0.11113750 0.267400000 0.004366667 -0.26303333 2.303419e-12 7.3027e-18 FALSE TRUE
ENST00000524203 ENSG00000078674 HEK293_OSMI2_2hA HEK293_TMG_2hB PCM1 protein_coding processed_transcript 16.43441 5.102971 22.85721 0.225636 0.3658599 2.161047 1.1431809 0.72310235 0.19369840 0.37186750 0.193698399 -1.8475800 0.10959583 0.139100000 0.008700000 -0.13040000 2.960502e-01 7.3027e-18 FALSE FALSE
MSTRG.31218.1 ENSG00000078674 HEK293_OSMI2_2hA HEK293_TMG_2hB PCM1 protein_coding   16.43441 5.102971 22.85721 0.225636 0.3658599 2.161047 0.7856843 0.04225002 1.58621698 0.02116262 0.094060643 4.9330813 0.03401250 0.008033333 0.069400000 0.06136667 2.002029e-05 7.3027e-18 FALSE TRUE
MSTRG.31218.10 ENSG00000078674 HEK293_OSMI2_2hA HEK293_TMG_2hB PCM1 protein_coding   16.43441 5.102971 22.85721 0.225636 0.3658599 2.161047 0.6714186 0.16068828 2.03605538 0.16068828 0.245836966 3.5834093 0.03878333 0.032366667 0.089100000 0.05673333 2.629259e-01 7.3027e-18 FALSE TRUE
MSTRG.31218.12 ENSG00000078674 HEK293_OSMI2_2hA HEK293_TMG_2hB PCM1 protein_coding   16.43441 5.102971 22.85721 0.225636 0.3658599 2.161047 1.2105050 0.64613650 0.96701883 0.14142507 0.695148159 0.5743904 0.07748750 0.127300000 0.043266667 -0.08403333 4.090042e-01 7.3027e-18 FALSE TRUE
MSTRG.31218.13 ENSG00000078674 HEK293_OSMI2_2hA HEK293_TMG_2hB PCM1 protein_coding   16.43441 5.102971 22.85721 0.225636 0.3658599 2.161047 1.2830479 0.00000000 2.97239932 0.00000000 0.408860523 8.2203296 0.05028333 0.000000000 0.129733333 0.12973333 1.837061e-11 7.3027e-18 FALSE TRUE
MSTRG.31218.5 ENSG00000078674 HEK293_OSMI2_2hA HEK293_TMG_2hB PCM1 protein_coding   16.43441 5.102971 22.85721 0.225636 0.3658599 2.161047 1.8860371 0.00000000 3.26142601 0.00000000 0.142412832 8.3537758 0.09965417 0.000000000 0.142600000 0.14260000 7.302700e-18 7.3027e-18 FALSE TRUE
MSTRG.31218.6 ENSG00000078674 HEK293_OSMI2_2hA HEK293_TMG_2hB PCM1 protein_coding   16.43441 5.102971 22.85721 0.225636 0.3658599 2.161047 0.3637874 0.18395313 2.07734278 0.18395313 1.242456217 3.4278876 0.02673750 0.037066667 0.091766667 0.05470000 6.962618e-01 7.3027e-18 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000078674 E001 1.3275450 0.0096765512 1.285809e-01 2.321809e-01 8 17922941 17922957 17 + 0.368 0.000 -13.689
ENSG00000078674 E002 1.3275450 0.0096765512 1.285809e-01 2.321809e-01 8 17922958 17922967 10 + 0.368 0.000 -13.668
ENSG00000078674 E003 1.1866387 0.0108718070 1.645806e-01 2.811326e-01 8 17922968 17922987 20 + 0.340 0.000 -13.498
ENSG00000078674 E004 1.0351233 0.0120311105 2.127236e-01 3.417530e-01 8 17922988 17922989 2 + 0.309 0.000 -13.305
ENSG00000078674 E005 1.0351233 0.0120311105 2.127236e-01 3.417530e-01 8 17922990 17922991 2 + 0.309 0.000 -13.305
ENSG00000078674 E006 1.6220431 0.0279674257 8.462520e-02 1.667984e-01 8 17922992 17922997 6 + 0.420 0.000 -13.957
ENSG00000078674 E007 2.9581209 0.0053160100 1.097291e-02 3.109813e-02 8 17922998 17922998 1 + 0.599 0.000 -14.820
ENSG00000078674 E008 10.7891687 0.0015388004 2.588475e-07 2.426657e-06 8 17922999 17923005 7 + 1.073 0.000 -16.687
ENSG00000078674 E009 13.3273124 0.0012700847 3.018777e-07 2.792199e-06 8 17923006 17923009 4 + 1.153 0.234 -4.210
ENSG00000078674 E010 19.3246422 0.0014123655 1.271556e-05 8.247767e-05 8 17923010 17923027 18 + 1.284 0.723 -2.091
ENSG00000078674 E011 48.4736568 0.0059968820 4.022218e-08 4.421475e-07 8 17923028 17923188 161 + 1.664 1.164 -1.730
ENSG00000078674 E012 33.1101392 0.0006084296 2.268962e-03 8.056226e-03 8 17924713 17924743 31 + 1.481 1.223 -0.897
ENSG00000078674 E013 32.2720007 0.0060340802 9.671866e-05 5.067078e-04 8 17924744 17924780 37 + 1.484 1.094 -1.369
ENSG00000078674 E014 0.2998086 0.0290785164 2.590527e-01   8 17924781 17927953 3173 + 0.060 0.234 2.263
ENSG00000078674 E015 5.3584788 0.0029170073 3.411489e-02 7.998519e-02 8 17934706 17934858 153 + 0.781 0.385 -1.822
ENSG00000078674 E016 62.5767622 0.0043380218 3.573136e-09 4.779833e-08 8 17935589 17935706 118 + 1.770 1.307 -1.584
ENSG00000078674 E017 42.7432917 0.0005429259 3.183559e-09 4.299064e-08 8 17937134 17937175 42 + 1.612 1.094 -1.806
ENSG00000078674 E018 88.9942341 0.0003341106 2.278905e-12 5.274182e-11 8 17937176 17937379 204 + 1.915 1.511 -1.370
ENSG00000078674 E019 57.0564238 0.0438598731 6.664302e-04 2.775650e-03 8 17938740 17938838 99 + 1.727 1.309 -1.436
ENSG00000078674 E020 80.5475392 0.0073568366 2.521079e-07 2.370042e-06 8 17938839 17939009 171 + 1.870 1.492 -1.282
ENSG00000078674 E021 0.2944980 0.3661644535 1.000000e+00   8 17939010 17939016 7 + 0.113 0.000 -11.497
ENSG00000078674 E022 64.0199645 0.0018977179 7.182414e-04 2.964266e-03 8 17939691 17939861 171 + 1.752 1.539 -0.726
ENSG00000078674 E023 24.2689354 0.0237021371 3.733336e-02 8.609905e-02 8 17940042 17940158 117 + 1.353 1.092 -0.922
ENSG00000078674 E024 6.2955702 0.0027412403 5.317724e-02 1.148052e-01 8 17941647 17941835 189 + 0.832 0.497 -1.435
ENSG00000078674 E025 62.1467263 0.0367719037 2.682625e-02 6.563035e-02 8 17947186 17947363 178 + 1.742 1.516 -0.768
ENSG00000078674 E026 61.7909904 0.0311223864 6.153964e-03 1.901659e-02 8 17950615 17950724 110 + 1.747 1.463 -0.969
ENSG00000078674 E027 118.2161014 0.0014096749 6.096197e-11 1.113055e-09 8 17952970 17953186 217 + 2.029 1.695 -1.125
ENSG00000078674 E028 97.5628533 0.0003310505 9.720462e-11 1.718149e-09 8 17955470 17955653 184 + 1.949 1.605 -1.163
ENSG00000078674 E029 1.2296269 0.2389263060 8.175610e-01 8.846424e-01 8 17955654 17955955 302 + 0.310 0.234 -0.544
ENSG00000078674 E030 87.4146719 0.0002885602 1.847975e-11 3.682479e-10 8 17956604 17956777 174 + 1.905 1.520 -1.306
ENSG00000078674 E031 98.6777362 0.0003204990 7.922164e-14 2.286457e-12 8 17957264 17957421 158 + 1.959 1.547 -1.392
ENSG00000078674 E032 4.3525003 0.0036606473 9.880743e-02 1.886574e-01 8 17957537 17957539 3 + 0.700 0.385 -1.489
ENSG00000078674 E033 78.2572406 0.0003355858 4.334472e-10 6.864365e-09 8 17957540 17957657 118 + 1.857 1.481 -1.278
ENSG00000078674 E034 74.1425598 0.0006253007 1.577724e-13 4.360886e-12 8 17957658 17957775 118 + 1.844 1.351 -1.685
ENSG00000078674 E035 63.3653816 0.0003918480 1.137300e-07 1.143499e-06 8 17960014 17960093 80 + 1.763 1.415 -1.190
ENSG00000078674 E036 73.3340997 0.0073586650 3.551179e-05 2.073029e-04 8 17960094 17960165 72 + 1.821 1.522 -1.015
ENSG00000078674 E037 86.3992178 0.0232676097 7.306541e-03 2.201620e-02 8 17960315 17960444 130 + 1.883 1.653 -0.776
ENSG00000078674 E038 76.5117804 0.0003573871 5.367245e-02 1.156779e-01 8 17962034 17962174 141 + 1.811 1.713 -0.329
ENSG00000078674 E039 0.6235652 0.0193279159 6.900303e-01 7.918310e-01 8 17962175 17962213 39 + 0.160 0.234 0.681
ENSG00000078674 E040 0.4439371 0.0215704150 7.428576e-01 8.316765e-01 8 17962953 17963100 148 + 0.160 0.000 -12.083
ENSG00000078674 E041 101.0067713 0.0004280235 2.289411e-02 5.752206e-02 8 17963101 17963291 191 + 1.930 1.829 -0.342
ENSG00000078674 E042 121.9590996 0.0014942994 2.596400e-03 9.055232e-03 8 17964568 17964768 201 + 2.016 1.881 -0.452
ENSG00000078674 E043 0.1472490 0.0428029347 1.000000e+00   8 17964769 17964770 2 + 0.060 0.000 -10.498
ENSG00000078674 E044 122.4762138 0.0002851650 3.324171e-02 7.827701e-02 8 17965999 17966218 220 + 2.011 1.927 -0.282
ENSG00000078674 E045 83.4973928 0.0003511093 2.156118e-01 3.451519e-01 8 17966328 17966473 146 + 1.841 1.785 -0.190
ENSG00000078674 E046 87.9368081 0.0004415426 3.912854e-01 5.352074e-01 8 17966980 17967170 191 + 1.842 1.889 0.156
ENSG00000078674 E047 0.2987644 0.0294581006 1.000000e+00   8 17969423 17969576 154 + 0.113 0.000 -11.498
ENSG00000078674 E048 91.2516227 0.0003122600 6.130246e-01 7.318307e-01 8 17969577 17969748 172 + 1.863 1.893 0.099
ENSG00000078674 E049 122.9325862 0.0002442843 4.181927e-01 5.614798e-01 8 17972329 17972582 254 + 2.003 1.975 -0.091
ENSG00000078674 E050 80.9528926 0.0003175347 3.811713e-01 5.254669e-01 8 17972583 17972672 90 + 1.823 1.785 -0.130
ENSG00000078674 E051 40.5783633 0.0019551431 3.895955e-01 5.336666e-01 8 17972673 17972687 15 + 1.507 1.573 0.225
ENSG00000078674 E052 0.2944980 0.3661644535 1.000000e+00   8 17980221 17980590 370 + 0.113 0.000 -11.497
ENSG00000078674 E053 40.6983179 0.0005406261 5.031377e-01 6.391171e-01 8 17980591 17980755 165 + 1.513 1.565 0.175
ENSG00000078674 E054 0.0000000       8 17982540 17982637 98 +      
ENSG00000078674 E055 1.8542111 0.0080138673 3.705570e-01 5.149823e-01 8 17983233 17983289 57 + 0.420 0.234 -1.193
ENSG00000078674 E056 116.3061054 0.0006521226 4.624835e-01 6.023382e-01 8 17985447 17985619 173 + 1.964 2.001 0.123
ENSG00000078674 E057 125.5959068 0.0009671707 4.042836e-01 5.480054e-01 8 17985959 17986087 129 + 1.999 2.039 0.134
ENSG00000078674 E058 1.0404339 0.0118564197 8.336936e-01 8.958389e-01 8 17986088 17986263 176 + 0.277 0.234 -0.321
ENSG00000078674 E059 112.2199926 0.0004582121 6.945786e-01 7.953769e-01 8 17989859 17989979 121 + 1.953 1.976 0.076
ENSG00000078674 E060 111.2558848 0.0002832824 1.191247e-02 3.332469e-02 8 17991542 17991676 135 + 1.932 2.039 0.361
ENSG00000078674 E061 39.6929620 0.0005354039 1.432200e-02 3.896178e-02 8 17991677 17991700 24 + 1.476 1.642 0.565
ENSG00000078674 E062 96.8103965 0.0021256231 1.532523e-02 4.122636e-02 8 17993483 17993619 137 + 1.867 1.989 0.408
ENSG00000078674 E063 3.1264944 0.1779128511 5.050540e-02 1.100591e-01 8 18006054 18006250 197 + 0.422 0.830 1.809
ENSG00000078674 E064 7.0566875 0.0025464321 2.403244e-01 3.745125e-01 8 18006251 18006262 12 + 0.781 0.947 0.638
ENSG00000078674 E065 85.0053239 0.0005613297 2.009804e-02 5.169398e-02 8 18006263 18006397 135 + 1.813 1.927 0.385
ENSG00000078674 E066 125.6253555 0.0002968524 1.473507e-02 3.989189e-02 8 18009547 18009744 198 + 1.983 2.083 0.334
ENSG00000078674 E067 93.7347258 0.0002777338 5.451792e-04 2.328911e-03 8 18010609 18010668 60 + 1.842 1.998 0.523
ENSG00000078674 E068 144.2808215 0.0002206993 9.078863e-09 1.127993e-07 8 18011237 18011366 130 + 2.015 2.218 0.679
ENSG00000078674 E069 159.8160042 0.0002179874 2.226438e-16 9.181365e-15 8 18011667 18011827 161 + 2.041 2.308 0.893
ENSG00000078674 E070 0.1515154 0.0421367350 1.000000e+00   8 18013828 18013881 54 + 0.060 0.000 -10.498
ENSG00000078674 E071 0.4470576 0.0230104971 4.825596e-01 6.206935e-01 8 18013882 18013963 82 + 0.113 0.234 1.263
ENSG00000078674 E072 90.0233296 0.0003320012 4.359164e-14 1.304288e-12 8 18013964 18013987 24 + 1.774 2.095 1.079
ENSG00000078674 E073 112.9831926 0.0002592288 3.008885e-17 1.380538e-15 8 18013988 18014036 49 + 1.873 2.193 1.073
ENSG00000078674 E074 196.9489818 0.0005581072 1.158990e-28 1.731603e-26 8 18014584 18014840 257 + 2.108 2.440 1.109
ENSG00000078674 E075 0.8815290 0.1172875567 4.707193e-02 1.039533e-01 8 18015701 18015795 95 + 0.113 0.500 2.866
ENSG00000078674 E076 1.7693146 0.0078462190 3.351526e-02 7.880558e-02 8 18024951 18025360 410 + 0.277 0.660 2.002
ENSG00000078674 E077 113.9036469 0.0045248568 3.543908e-16 1.420615e-14 8 18025361 18025453 93 + 1.850 2.244 1.320
ENSG00000078674 E078 102.2977178 0.0153181810 2.235362e-07 2.123039e-06 8 18025544 18025658 115 + 1.812 2.188 1.262
ENSG00000078674 E079 192.7520490 0.0193728049 9.570666e-04 3.811908e-03 8 18027637 18029948 2312 + 2.129 2.379 0.836