ENSG00000075413

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000216288 ENSG00000075413 HEK293_OSMI2_2hA HEK293_TMG_2hB MARK3 protein_coding protein_coding 29.10411 19.95999 40.77387 0.5625846 0.5517696 1.030165 8.522152 4.4767744 12.5718810 0.4955651 0.7204379 1.487597 0.26858333 0.22453333 0.30846667 0.08393333 1.655737e-01 8.06912e-34 FALSE TRUE
ENST00000429436 ENSG00000075413 HEK293_OSMI2_2hA HEK293_TMG_2hB MARK3 protein_coding protein_coding 29.10411 19.95999 40.77387 0.5625846 0.5517696 1.030165 1.627298 0.0000000 4.3703558 0.0000000 2.3071225 8.774904 0.04696250 0.00000000 0.10710000 0.10710000 2.393641e-01 8.06912e-34 FALSE TRUE
ENST00000554627 ENSG00000075413 HEK293_OSMI2_2hA HEK293_TMG_2hB MARK3 protein_coding protein_coding 29.10411 19.95999 40.77387 0.5625846 0.5517696 1.030165 1.132995 4.1138889 0.0000000 0.6532962 0.0000000 -8.687862 0.05841250 0.20486667 0.00000000 -0.20486667 8.069120e-34 8.06912e-34 FALSE TRUE
ENST00000559274 ENSG00000075413 HEK293_OSMI2_2hA HEK293_TMG_2hB MARK3 protein_coding retained_intron 29.10411 19.95999 40.77387 0.5625846 0.5517696 1.030165 1.831041 0.8592402 2.6729545 0.3751488 0.6682871 1.625996 0.06730417 0.04206667 0.06513333 0.02306667 6.341363e-01 8.06912e-34 FALSE FALSE
ENST00000561314 ENSG00000075413 HEK293_OSMI2_2hA HEK293_TMG_2hB MARK3 protein_coding protein_coding 29.10411 19.95999 40.77387 0.5625846 0.5517696 1.030165 2.130490 3.3349094 0.2812712 0.5698435 0.1675125 -3.521532 0.08163333 0.16883333 0.00700000 -0.16183333 1.296006e-03 8.06912e-34 FALSE TRUE
ENST00000676938 ENSG00000075413 HEK293_OSMI2_2hA HEK293_TMG_2hB MARK3 protein_coding protein_coding 29.10411 19.95999 40.77387 0.5625846 0.5517696 1.030165 3.829890 3.0349905 7.4668631 0.8891565 0.6648959 1.295995 0.12796250 0.15413333 0.18326667 0.02913333 7.774199e-01 8.06912e-34 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000075413 E001 0.0000000       14 103385377 103385379 3 +      
ENSG00000075413 E002 0.0000000       14 103385380 103385380 1 +      
ENSG00000075413 E003 0.1472490 0.0435124489 1.000000e+00   14 103385381 103385388 8 + 0.087 0.000 -10.034
ENSG00000075413 E004 0.1472490 0.0435124489 1.000000e+00   14 103385389 103385389 1 + 0.087 0.000 -12.227
ENSG00000075413 E005 0.1472490 0.0435124489 1.000000e+00   14 103385390 103385391 2 + 0.087 0.000 -12.227
ENSG00000075413 E006 0.8868276 0.0252142726 7.372149e-01 8.274520e-01 14 103385392 103385396 5 + 0.221 0.292 0.529
ENSG00000075413 E007 3.4709531 0.0046398066 3.045004e-01 4.465052e-01 14 103385397 103385410 14 + 0.678 0.530 -0.656
ENSG00000075413 E008 4.8244207 0.0041947510 1.004741e-01 1.911845e-01 14 103385411 103385412 2 + 0.815 0.588 -0.949
ENSG00000075413 E009 4.8244207 0.0041947510 1.004741e-01 1.911845e-01 14 103385413 103385414 2 + 0.815 0.588 -0.949
ENSG00000075413 E010 6.6531722 0.0164796970 1.191003e-01 2.186526e-01 14 103385415 103385422 8 + 0.931 0.725 -0.805
ENSG00000075413 E011 7.6173190 0.0060379117 6.455119e-02 1.342949e-01 14 103385423 103385424 2 + 0.984 0.762 -0.853
ENSG00000075413 E012 28.3433852 0.0228059858 3.453953e-02 8.078684e-02 14 103385425 103385452 28 + 1.514 1.313 -0.693
ENSG00000075413 E013 45.3331329 0.0263670098 3.790781e-02 8.717659e-02 14 103385453 103385540 88 + 1.706 1.525 -0.614
ENSG00000075413 E014 59.8575052 0.0285061241 1.310168e-02 3.614416e-02 14 103385541 103385697 157 + 1.831 1.618 -0.724
ENSG00000075413 E015 57.0258129 0.0034260151 1.980445e-05 1.229444e-04 14 103385698 103385859 162 + 1.815 1.584 -0.784
ENSG00000075413 E016 83.8928741 0.0006472474 2.809010e-08 3.180294e-07 14 103385860 103385979 120 + 1.981 1.759 -0.747
ENSG00000075413 E017 60.9361130 0.0004176568 3.926785e-08 4.326109e-07 14 103385980 103385984 5 + 1.851 1.594 -0.873
ENSG00000075413 E018 89.8009978 0.0003946197 1.067315e-09 1.574396e-08 14 103385985 103386029 45 + 2.013 1.780 -0.786
ENSG00000075413 E019 70.7170230 0.0053050623 1.014662e-04 5.286271e-04 14 103386030 103386040 11 + 1.904 1.699 -0.690
ENSG00000075413 E020 107.3059725 0.0022552718 2.373729e-06 1.816660e-05 14 103386041 103386080 40 + 2.076 1.891 -0.620
ENSG00000075413 E021 0.3289534 0.0308052758 5.994692e-01   14 103386239 103386388 150 + 0.087 0.170 1.110
ENSG00000075413 E022 0.0000000       14 103393762 103393804 43 +      
ENSG00000075413 E023 0.8815316 0.0131063513 5.828395e-02 1.236835e-01 14 103398951 103399041 91 + 0.367 0.000 -15.108
ENSG00000075413 E024 126.2616879 0.0010564409 3.427872e-10 5.521640e-09 14 103405076 103405133 58 + 2.153 1.937 -0.725
ENSG00000075413 E025 171.2984136 0.0003219992 7.955541e-10 1.201820e-08 14 103405134 103405267 134 + 2.270 2.106 -0.546
ENSG00000075413 E026 0.1817044 0.0409377098 2.384826e-01   14 103411645 103411749 105 + 0.000 0.170 12.715
ENSG00000075413 E027 0.0000000       14 103411750 103411765 16 +      
ENSG00000075413 E028 0.0000000       14 103417273 103417323 51 +      
ENSG00000075413 E029 0.1515154 0.0433981583 1.000000e+00   14 103417328 103417461 134 + 0.087 0.000 -12.228
ENSG00000075413 E030 0.0000000       14 103427748 103427835 88 +      
ENSG00000075413 E031 122.9099232 0.0003293400 2.490405e-05 1.511113e-04 14 103428387 103428440 54 + 2.115 1.989 -0.420
ENSG00000075413 E032 0.4375944 0.0266219891 2.661553e-01 4.043102e-01 14 103429193 103429373 181 + 0.221 0.000 -13.969
ENSG00000075413 E033 0.0000000       14 103438021 103438024 4 +      
ENSG00000075413 E034 0.2998086 0.0293906463 6.024486e-01   14 103438025 103438184 160 + 0.087 0.169 1.106
ENSG00000075413 E035 0.2966881 0.0272360047 4.786409e-01   14 103438185 103438333 149 + 0.159 0.000 -13.390
ENSG00000075413 E036 0.2214452 0.0413780565 2.380343e-01   14 103441470 103441563 94 + 0.000 0.170 12.713
ENSG00000075413 E037 112.9555317 0.0022118856 6.080536e-03 1.882285e-02 14 103448919 103448967 49 + 2.069 1.975 -0.315
ENSG00000075413 E038 138.8334020 0.0012126735 1.292564e-01 2.331518e-01 14 103451918 103451983 66 + 2.137 2.105 -0.107
ENSG00000075413 E039 1.3535813 0.0505262570 1.543862e-01 2.676085e-01 14 103451984 103451995 12 + 0.443 0.170 -1.888
ENSG00000075413 E040 0.6696487 0.0302733383 7.479386e-01 8.353460e-01 14 103457027 103457141 115 + 0.221 0.170 -0.473
ENSG00000075413 E041 156.1319891 0.0003262253 4.730195e-01 6.120420e-01 14 103457142 103457212 71 + 2.176 2.177 0.003
ENSG00000075413 E042 0.2924217 0.0271880099 4.789906e-01   14 103457213 103458195 983 + 0.159 0.000 -13.390
ENSG00000075413 E043 1.5177796 0.0198513136 4.773086e-01 6.158880e-01 14 103458727 103458795 69 + 0.324 0.465 0.790
ENSG00000075413 E044 142.3716265 0.0002615186 5.074792e-01 6.429913e-01 14 103462405 103462461 57 + 2.138 2.140 0.007
ENSG00000075413 E045 229.3907042 0.0012557540 4.153866e-01 5.587814e-01 14 103465557 103465713 157 + 2.344 2.342 -0.007
ENSG00000075413 E046 183.3437724 0.0002574419 1.056715e-01 1.991163e-01 14 103465714 103465793 80 + 2.255 2.232 -0.075
ENSG00000075413 E047 1.4372407 0.0091320969 9.739915e-01 9.877668e-01 14 103465794 103465971 178 + 0.367 0.386 0.109
ENSG00000075413 E048 185.8258259 0.0024660184 1.692473e-01 2.872060e-01 14 103465972 103466052 81 + 2.262 2.234 -0.094
ENSG00000075413 E049 152.2756649 0.0002217607 1.934580e-01 3.181205e-01 14 103466053 103466091 39 + 2.173 2.157 -0.056
ENSG00000075413 E050 1.8238318 0.0729837094 9.939675e-01 1.000000e+00 14 103466092 103466342 251 + 0.443 0.461 0.090
ENSG00000075413 E051 204.0991178 0.0002079732 3.672727e-01 5.116458e-01 14 103466343 103466442 100 + 2.293 2.292 -0.003
ENSG00000075413 E052 0.2998086 0.0293906463 6.024486e-01   14 103466443 103466831 389 + 0.087 0.169 1.106
ENSG00000075413 E053 205.3395695 0.0002384625 2.582047e-01 3.954196e-01 14 103467079 103467191 113 + 2.277 2.329 0.174
ENSG00000075413 E054 12.2485515 0.0363691263 2.867019e-01 4.271242e-01 14 103467192 103467656 465 + 1.041 1.200 0.573
ENSG00000075413 E055 4.1110657 0.0828733243 6.584050e-01 7.675537e-01 14 103467714 103467754 41 + 0.658 0.786 0.527
ENSG00000075413 E056 12.7258269 0.0779630841 7.308986e-01 8.226925e-01 14 103467755 103468032 278 + 1.098 1.174 0.270
ENSG00000075413 E057 114.7062239 0.0002437584 3.004062e-02 7.203692e-02 14 103468033 103468080 48 + 2.008 2.104 0.324
ENSG00000075413 E058 113.7407741 0.0002604792 7.165650e-03 2.165331e-02 14 103468081 103468085 5 + 1.996 2.111 0.384
ENSG00000075413 E059 235.5751428 0.0002494250 7.578569e-02 1.527582e-01 14 103468086 103468186 101 + 2.330 2.396 0.220
ENSG00000075413 E060 0.2987644 0.0272624667 4.784801e-01   14 103469203 103469303 101 + 0.159 0.000 -13.390
ENSG00000075413 E061 342.7981521 0.0001605539 4.089615e-02 9.269527e-02 14 103474993 103475210 218 + 2.495 2.558 0.212
ENSG00000075413 E062 0.1482932 0.0413963351 2.401363e-01   14 103475211 103475714 504 + 0.000 0.169 12.706
ENSG00000075413 E063 0.0000000       14 103478775 103478839 65 +      
ENSG00000075413 E064 184.3530012 0.0013941301 1.320836e-01 2.370079e-01 14 103480387 103480436 50 + 2.225 2.297 0.239
ENSG00000075413 E065 169.8664410 0.0028733243 1.264632e-01 2.292222e-01 14 103480437 103480490 54 + 2.186 2.268 0.275
ENSG00000075413 E066 6.4497125 0.0031056505 5.180568e-03 1.642005e-02 14 103480491 103481655 1165 + 0.964 0.587 -1.516
ENSG00000075413 E067 0.0000000       14 103481801 103481815 15 +      
ENSG00000075413 E068 0.0000000       14 103481816 103481829 14 +      
ENSG00000075413 E069 0.0000000       14 103481830 103481861 32 +      
ENSG00000075413 E070 0.0000000       14 103481862 103481929 68 +      
ENSG00000075413 E071 0.0000000       14 103481930 103482067 138 +      
ENSG00000075413 E072 3.0259994 0.0051012100 7.265501e-02 1.477614e-01 14 103485308 103486113 806 + 0.678 0.386 -1.394
ENSG00000075413 E073 1.9845083 0.0095984426 3.247830e-02 7.676463e-02 14 103486118 103486605 488 + 0.563 0.170 -2.475
ENSG00000075413 E074 1.2438831 0.1262955591 2.569004e-01 3.939192e-01 14 103486606 103487118 513 + 0.406 0.171 -1.681
ENSG00000075413 E075 0.0000000       14 103487119 103487180 62 +      
ENSG00000075413 E076 0.0000000       14 103487181 103487290 110 +      
ENSG00000075413 E077 0.6224193 0.0167838053 4.837687e-01 6.217886e-01 14 103487291 103487378 88 + 0.159 0.291 1.108
ENSG00000075413 E078 4.9478314 0.0040129892 6.595456e-01 7.683444e-01 14 103487379 103487707 329 + 0.717 0.797 0.322
ENSG00000075413 E079 8.6397228 0.0148804112 4.707797e-02 1.039599e-01 14 103487708 103489052 1345 + 1.041 0.796 -0.925
ENSG00000075413 E080 4.3703826 0.0042357095 5.051925e-03 1.607363e-02 14 103489053 103489396 344 + 0.830 0.386 -2.007
ENSG00000075413 E081 13.2214529 0.0308505622 2.486631e-01 3.843439e-01 14 103489397 103490951 1555 + 1.182 1.057 -0.449
ENSG00000075413 E082 1.9981242 0.0135936242 1.619432e-01 2.776590e-01 14 103490952 103490977 26 + 0.536 0.291 -1.350
ENSG00000075413 E083 1.8529515 0.0604842848 2.541101e-01 3.907499e-01 14 103490978 103490981 4 + 0.507 0.292 -1.212
ENSG00000075413 E084 3.0395902 0.0238964669 2.308014e-02 5.791555e-02 14 103490982 103491107 126 + 0.698 0.291 -2.061
ENSG00000075413 E085 6.5833014 0.0446598454 7.737529e-01 8.540417e-01 14 103491108 103491538 431 + 0.844 0.909 0.249
ENSG00000075413 E086 6.1632131 0.0513254619 9.612156e-01 9.795821e-01 14 103491539 103491776 238 + 0.844 0.854 0.038
ENSG00000075413 E087 360.6083319 0.0004666712 7.264298e-10 1.105559e-08 14 103491777 103492034 258 + 2.482 2.633 0.504
ENSG00000075413 E088 11.3226468 0.0661305243 2.485249e-01 3.841909e-01 14 103494732 103498501 3770 + 1.128 0.991 -0.499
ENSG00000075413 E089 68.4342624 0.0003778101 1.378713e-04 6.942378e-04 14 103498502 103498528 27 + 1.750 1.937 0.632
ENSG00000075413 E090 6.9235450 0.0097525029 8.091124e-01 8.787452e-01 14 103498529 103498826 298 + 0.896 0.885 -0.041
ENSG00000075413 E091 3.3202940 0.0052702118 9.150474e-01 9.502098e-01 14 103498827 103498864 38 + 0.636 0.638 0.007
ENSG00000075413 E092 4.3327144 0.0036776903 6.290944e-01 7.445356e-01 14 103498865 103498901 37 + 0.735 0.683 -0.214
ENSG00000075413 E093 26.2039841 0.0007448159 6.041959e-01 7.248078e-01 14 103498902 103500155 1254 + 1.427 1.412 -0.049
ENSG00000075413 E094 46.0704095 0.0109659041 6.574067e-03 2.011917e-02 14 103500156 103500200 45 + 1.567 1.787 0.747
ENSG00000075413 E095 634.5476378 0.0056431598 7.477886e-10 1.135875e-08 14 103502882 103503831 950 + 2.682 2.925 0.811