ENSG00000072210

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000579403 ENSG00000072210 HEK293_OSMI2_2hA HEK293_TMG_2hB ALDH3A2 protein_coding retained_intron 21.71905 12.65474 31.48817 1.198394 0.7017249 1.314451 1.6697862 0.0000000 2.919912 0.0000000 0.2177813 8.1947134 0.06321667 0.0000000 0.09266667 0.09266667 9.883535e-21 9.883535e-21 FALSE  
ENST00000671878 ENSG00000072210 HEK293_OSMI2_2hA HEK293_TMG_2hB ALDH3A2 protein_coding protein_coding 21.71905 12.65474 31.48817 1.198394 0.7017249 1.314451 3.8411264 2.5626167 4.536705 0.1559389 0.5574897 0.8215848 0.17530000 0.2078667 0.14486667 -0.06300000 3.928543e-01 9.883535e-21 FALSE  
ENST00000672709 ENSG00000072210 HEK293_OSMI2_2hA HEK293_TMG_2hB ALDH3A2 protein_coding protein_coding 21.71905 12.65474 31.48817 1.198394 0.7017249 1.314451 1.1340201 0.1333943 2.603274 0.1333943 0.5936731 4.1877991 0.04780417 0.0114000 0.08200000 0.07060000 7.850381e-02 9.883535e-21 FALSE  
MSTRG.13868.10 ENSG00000072210 HEK293_OSMI2_2hA HEK293_TMG_2hB ALDH3A2 protein_coding   21.71905 12.65474 31.48817 1.198394 0.7017249 1.314451 3.4440018 2.6653969 4.085017 0.9529838 1.4188128 0.6141167 0.15616250 0.2010000 0.13003333 -0.07096667 6.107865e-01 9.883535e-21 FALSE  
MSTRG.13868.16 ENSG00000072210 HEK293_OSMI2_2hA HEK293_TMG_2hB ALDH3A2 protein_coding   21.71905 12.65474 31.48817 1.198394 0.7017249 1.314451 5.6165522 4.1682037 9.309416 0.3080017 1.2596185 1.1573567 0.26247917 0.3340333 0.29586667 -0.03816667 8.037107e-01 9.883535e-21 FALSE  
MSTRG.13868.22 ENSG00000072210 HEK293_OSMI2_2hA HEK293_TMG_2hB ALDH3A2 protein_coding   21.71905 12.65474 31.48817 1.198394 0.7017249 1.314451 0.9887874 1.2058300 1.063186 0.2545016 0.4432779 -0.1800416 0.05492083 0.0939000 0.03380000 -0.06010000 2.092988e-01 9.883535e-21 FALSE  
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000072210 E001 0.1472490 0.0438740902 9.473116e-01   17 19648136 19648152 17 + 0.093 0.000 -9.692
ENSG00000072210 E002 0.1472490 0.0438740902 9.473116e-01   17 19648153 19648173 21 + 0.093 0.000 -12.015
ENSG00000072210 E003 0.1472490 0.0438740902 9.473116e-01   17 19648174 19648179 6 + 0.093 0.000 -12.015
ENSG00000072210 E004 0.6717251 0.0329119617 6.789037e-01 7.832588e-01 17 19648180 19648187 8 + 0.235 0.159 -0.697
ENSG00000072210 E005 1.1135859 0.0119968787 2.181424e-01 3.481791e-01 17 19648188 19648265 78 + 0.387 0.159 -1.699
ENSG00000072210 E006 0.2944980 0.3339015153 5.347316e-01   17 19648526 19648722 197 + 0.170 0.000 -12.078
ENSG00000072210 E007 1.0414635 0.0544722205 4.779261e-01 6.163909e-01 17 19648723 19648750 28 + 0.235 0.368 0.891
ENSG00000072210 E008 1.9690019 0.0704841033 1.547771e-01 2.681203e-01 17 19648751 19648766 16 + 0.342 0.611 1.361
ENSG00000072210 E009 8.4968688 0.0020703873 3.628956e-01 5.073014e-01 17 19648767 19648777 11 + 0.925 1.031 0.390
ENSG00000072210 E010 9.5499881 0.0037116745 6.448808e-01 7.571119e-01 17 19648778 19648780 3 + 0.994 1.048 0.198
ENSG00000072210 E011 13.5861267 0.0133496290 6.776081e-01 7.822837e-01 17 19648781 19648785 5 + 1.137 1.180 0.155
ENSG00000072210 E012 21.9577119 0.0011938172 4.707347e-01 6.099580e-01 17 19648786 19648787 2 + 1.371 1.320 -0.178
ENSG00000072210 E013 32.7119113 0.0084455508 7.505608e-01 8.371987e-01 17 19648788 19648804 17 + 1.507 1.529 0.074
ENSG00000072210 E014 32.7119113 0.0084455508 7.505608e-01 8.371987e-01 17 19648805 19648805 1 + 1.507 1.529 0.074
ENSG00000072210 E015 37.4238429 0.0088157381 9.793019e-01 9.911096e-01 17 19648806 19648830 25 + 1.576 1.571 -0.016
ENSG00000072210 E016 40.4939953 0.0014563431 8.096453e-01 8.791526e-01 17 19648831 19648843 13 + 1.602 1.620 0.059
ENSG00000072210 E017 40.0116657 0.0006416457 9.917144e-01 9.989159e-01 17 19648844 19648850 7 + 1.602 1.606 0.012
ENSG00000072210 E018 46.4132137 0.0006820679 8.128535e-01 8.813530e-01 17 19648851 19648877 27 + 1.663 1.680 0.058
ENSG00000072210 E019 40.8516672 0.0005330105 6.649732e-01 7.726907e-01 17 19648878 19648925 48 + 1.605 1.633 0.097
ENSG00000072210 E020 35.7319594 0.0005902191 7.954664e-01 8.694029e-01 17 19648926 19648934 9 + 1.562 1.550 -0.039
ENSG00000072210 E021 47.0970357 0.0004992709 2.456019e-01 3.807667e-01 17 19648935 19648952 18 + 1.696 1.638 -0.195
ENSG00000072210 E022 43.5425093 0.0005279310 3.469034e-01 4.910546e-01 17 19648953 19648961 9 + 1.658 1.611 -0.162
ENSG00000072210 E023 41.6153470 0.0005454071 5.295027e-01 6.622743e-01 17 19648962 19648962 1 + 1.632 1.601 -0.107
ENSG00000072210 E024 70.0507910 0.0038117306 4.594792e-01 5.996333e-01 17 19648963 19649001 39 + 1.859 1.819 -0.136
ENSG00000072210 E025 85.7326146 0.0089569985 3.883290e-01 5.324246e-01 17 19649002 19649080 79 + 1.952 1.898 -0.183
ENSG00000072210 E026 84.8305669 0.0059558199 5.594449e-02 1.196018e-01 17 19649081 19649117 37 + 1.966 1.859 -0.359
ENSG00000072210 E027 70.4696254 0.0003767108 2.147145e-03 7.681577e-03 17 19649118 19649124 7 + 1.895 1.764 -0.444
ENSG00000072210 E028 206.8055016 0.0036026699 6.195806e-02 1.299159e-01 17 19651547 19651778 232 + 2.338 2.266 -0.242
ENSG00000072210 E029 123.8909888 0.0018170851 2.654354e-01 4.034948e-01 17 19652547 19652632 86 + 2.107 2.066 -0.136
ENSG00000072210 E030 3.5010559 0.0044068322 1.611489e-01 2.766025e-01 17 19652633 19652697 65 + 0.725 0.507 -0.963
ENSG00000072210 E031 3.0063059 0.0058161165 9.753752e-03 2.815724e-02 17 19653066 19653164 99 + 0.725 0.275 -2.285
ENSG00000072210 E032 2.0336368 0.0857584329 7.812866e-01 8.595028e-01 17 19654466 19654580 115 + 0.499 0.442 -0.289
ENSG00000072210 E033 3.2033237 0.0132603824 1.156535e-01 2.137661e-01 17 19654581 19654823 243 + 0.705 0.442 -1.202
ENSG00000072210 E034 2.4554253 0.1608522431 2.780850e-01 4.177124e-01 17 19654824 19654905 82 + 0.613 0.368 -1.219
ENSG00000072210 E035 8.9412170 0.0018218845 2.574025e-03 8.986462e-03 17 19654906 19655280 375 + 1.097 0.734 -1.378
ENSG00000072210 E036 5.8472744 0.0028728737 2.370804e-01 3.708054e-01 17 19655281 19655385 105 + 0.887 0.734 -0.601
ENSG00000072210 E037 3.0741713 0.0124717140 3.332913e-01 4.769897e-01 17 19655386 19655387 2 + 0.662 0.506 -0.702
ENSG00000072210 E038 17.6910643 0.0236520937 6.649687e-01 7.726902e-01 17 19655388 19656144 757 + 1.278 1.221 -0.200
ENSG00000072210 E039 6.8394044 0.0026576309 9.456333e-01 9.698916e-01 17 19656145 19656365 221 + 0.887 0.883 -0.015
ENSG00000072210 E040 89.3507270 0.0004047648 1.743062e-01 2.937847e-01 17 19656366 19656398 33 + 1.970 1.922 -0.162
ENSG00000072210 E041 75.2220483 0.0004145249 3.654456e-01 5.097603e-01 17 19656399 19656401 3 + 1.891 1.858 -0.111
ENSG00000072210 E042 140.0593405 0.0002732292 2.371109e-02 5.921818e-02 17 19656402 19656487 86 + 2.170 2.105 -0.218
ENSG00000072210 E043 152.4263874 0.0002710155 8.097497e-02 1.610598e-01 17 19656488 19656574 87 + 2.200 2.153 -0.156
ENSG00000072210 E044 0.3332198 0.0307693393 6.548169e-01   17 19656575 19657720 1146 + 0.093 0.159 0.885
ENSG00000072210 E045 0.1451727 0.0438750745 9.473303e-01   17 19657721 19657744 24 + 0.093 0.000 -12.015
ENSG00000072210 E046 175.8428615 0.0003006390 3.555871e-01 4.999549e-01 17 19657745 19657862 118 + 2.251 2.231 -0.069
ENSG00000072210 E047 0.5975289 0.0285432085 1.333889e-01 2.388367e-01 17 19657863 19658765 903 + 0.292 0.000 -14.151
ENSG00000072210 E048 0.0000000       17 19659573 19659699 127 +      
ENSG00000072210 E049 0.0000000       17 19659829 19659868 40 +      
ENSG00000072210 E050 1.0392880 0.0117788558 6.995958e-01 7.992747e-01 17 19659869 19661126 1258 + 0.342 0.275 -0.439
ENSG00000072210 E051 198.9476665 0.0002135153 8.521877e-01 9.083843e-01 17 19661127 19661268 142 + 2.292 2.302 0.032
ENSG00000072210 E052 0.1817044 0.0438711091 2.652444e-01   17 19661269 19661848 580 + 0.000 0.159 12.261
ENSG00000072210 E053 150.4905393 0.0008571566 9.934909e-01 1.000000e+00 17 19663333 19663373 41 + 2.173 2.178 0.015
ENSG00000072210 E054 213.3528401 0.0001968139 2.133175e-01 3.424474e-01 17 19663374 19663499 126 + 2.335 2.308 -0.089
ENSG00000072210 E055 2.9494983 0.0191071181 1.441322e-01 2.536311e-01 17 19663500 19664947 1448 + 0.684 0.441 -1.121
ENSG00000072210 E056 171.5218444 0.0006012834 8.951724e-01 9.369953e-01 17 19664948 19665040 93 + 2.227 2.235 0.026
ENSG00000072210 E057 100.7722572 0.0007733580 8.697921e-01 9.202727e-01 17 19665041 19665047 7 + 2.004 2.002 -0.007
ENSG00000072210 E058 142.7996864 0.0012087890 6.423693e-01 7.551656e-01 17 19671721 19671767 47 + 2.157 2.145 -0.041
ENSG00000072210 E059 119.6462167 0.0031425106 6.380505e-01 7.517819e-01 17 19671768 19671798 31 + 2.066 2.087 0.071
ENSG00000072210 E060 204.4729679 0.0002179640 5.085055e-03 1.616194e-02 17 19671799 19671956 158 + 2.276 2.351 0.250
ENSG00000072210 E061 1.8227851 0.0779315721 2.447418e-01 3.797470e-01 17 19671957 19672351 395 + 0.342 0.562 1.143
ENSG00000072210 E062 0.7447899 0.0368506272 8.501776e-01 9.070786e-01 17 19672352 19672431 80 + 0.235 0.274 0.294
ENSG00000072210 E063 1.9323710 0.1116961493 9.932903e-01 9.999619e-01 17 19672432 19673150 719 + 0.465 0.498 0.165
ENSG00000072210 E064 11.7730381 0.0015446980 6.736729e-02 1.389785e-01 17 19673151 19673199 49 + 1.024 1.205 0.650
ENSG00000072210 E065 8.9643484 0.0036061669 4.215840e-02 9.501628e-02 17 19673200 19673206 7 + 0.900 1.126 0.831
ENSG00000072210 E066 13.1523636 0.0019478383 5.918903e-03 1.839494e-02 17 19673207 19673275 69 + 1.034 1.291 0.918
ENSG00000072210 E067 0.9986021 0.0124000476 9.220396e-01 9.548044e-01 17 19673276 19673403 128 + 0.292 0.275 -0.113
ENSG00000072210 E068 1.7306920 0.0140690361 3.473610e-01 4.915701e-01 17 19673404 19673677 274 + 0.342 0.507 0.889
ENSG00000072210 E069 13.7622413 0.0061018870 4.485541e-01 5.898330e-01 17 19674084 19675495 1412 + 1.129 1.205 0.272
ENSG00000072210 E070 81.4472797 0.0023380451 1.598017e-02 4.268627e-02 17 19675496 19675499 4 + 1.865 1.980 0.386
ENSG00000072210 E071 0.5890081 0.0202468515 5.610491e-01 6.889494e-01 17 19675500 19675557 58 + 0.170 0.275 0.882
ENSG00000072210 E072 3.5773404 0.0044466035 9.522707e-01 9.741265e-01 17 19675558 19675561 4 + 0.662 0.657 -0.022
ENSG00000072210 E073 671.6741211 0.0011278829 7.341747e-05 3.966186e-04 17 19675562 19677598 2037 + 2.790 2.868 0.260
ENSG00000072210 E074 13.0000194 0.0046971445 6.429085e-09 8.218982e-08 17 19685275 19685760 486 + 0.813 1.388 2.091