• ENSG00000070159
  • 1 Isoform Switch
  • 2 Differential Exon Usage

ENSG00000070159

1 Isoform Switch

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

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isoform_idColumn filter
gene_idColumn filter
condition_1Column filter
condition_2Column filter
gene_nameColumn filter
gene_biotypeColumn filter
iso_biotypeColumn filter
gene_overall_meanColumn filter
gene_value_1Column filter
gene_value_2Column filter
gene_stderr_1Column filter
gene_stderr_2Column filter
gene_log2_fold_changeColumn filter
iso_overall_meanColumn filter
iso_value_1Column filter
iso_value_2Column filter
iso_stderr_1Column filter
iso_stderr_2Column filter
iso_log2_fold_changeColumn filter
IF_overallColumn filter
IF1Column filter
IF2Column filter
dIFColumn filter
isoform_switch_q_valueColumn filter
gene_switch_q_valueColumn filter
PTCColumn filter
codingPotentialColumn filter
ENST00000374541 ENSG00000070159 HEK293_OSMI2_2hA HEK293_TMG_2hB PTPN3 protein_coding protein_coding 5.432153 3.561012 6.376863 0.1077458 0.1719101 0.8387745 1.7354411 1.1010410 2.138035 0.1790459 0.1193231 0.9511056 0.32250417 0.3121667 0.3353667 0.02320000 0.8588475230 0.0004882359 FALSE TRUE
ENST00000447271 ENSG00000070159 HEK293_OSMI2_2hA HEK293_TMG_2hB PTPN3 protein_coding processed_transcript 5.432153 3.561012 6.376863 0.1077458 0.1719101 0.8387745 1.7444699 1.2905087 1.760598 0.1162476 0.2080764 0.4451605 0.32680833 0.3611667 0.2747333 -0.08643333 0.3149511900 0.0004882359   FALSE
MSTRG.33213.2 ENSG00000070159 HEK293_OSMI2_2hA HEK293_TMG_2hB PTPN3 protein_coding   5.432153 3.561012 6.376863 0.1077458 0.1719101 0.8387745 0.2104715 0.5680312 0.000000 0.3380968 0.0000000 -5.8530756 0.04778333 0.1555333 0.0000000 -0.15553333 0.0923772812 0.0004882359 FALSE TRUE
MSTRG.33213.7 ENSG00000070159 HEK293_OSMI2_2hA HEK293_TMG_2hB PTPN3 protein_coding   5.432153 3.561012 6.376863 0.1077458 0.1719101 0.8387745 1.6273058 0.4511653 2.458717 0.1082189 0.1173013 2.4204056 0.27776667 0.1279000 0.3868000 0.25890000 0.0004882359 0.0004882359 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

All exons whithin this gene region are shown and numbering below.

All exons whithin this gene region are shown and numbering below.

All exons whithin this gene region are shown and numbering below.

All isoforms whithin this gene region are shown below.

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groupIDColumn filter
featureIDColumn filter
exonBaseMeanColumn filter
dispersionColumn filter
pvalueColumn filter
padjColumn filter
seqnamesColumn filter
startColumn filter
endColumn filter
widthColumn filter
strandColumn filter
HEK293_TMG_2hBColumn filter
HEK293_OSMI2_2hAColumn filter
log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hBColumn filter
ENSG00000070159 E001 0.4772466 0.0219351843 3.378383e-01 4.817249e-01 9 109375466 109375614 149 - 0.100 0.259 1.655
ENSG00000070159 E002 0.0000000       9 109375694 109375699 6 -      
ENSG00000070159 E003 114.2775051 0.0006184437 2.057302e-13 5.594226e-12 9 109375700 109378542 2843 - 1.945 2.183 0.797
ENSG00000070159 E004 87.8564450 0.0003514927 1.191805e-07 1.193928e-06 9 109378543 109379086 544 - 1.856 2.048 0.645
ENSG00000070159 E005 35.4217462 0.0006108546 5.273626e-04 2.262085e-03 9 109379087 109379208 122 - 1.462 1.662 0.683
ENSG00000070159 E006 68.5195967 0.0004703464 3.098862e-03 1.055654e-02 9 109379209 109379633 425 - 1.779 1.902 0.416
ENSG00000070159 E007 34.7421095 0.0008709057 9.844167e-01 9.943305e-01 9 109381652 109381787 136 - 1.547 1.548 0.005
ENSG00000070159 E008 35.0450731 0.0081849989 9.280303e-01 9.586848e-01 9 109382302 109382447 146 - 1.547 1.550 0.012
ENSG00000070159 E009 0.0000000       9 109383307 109383422 116 -      
ENSG00000070159 E010 27.5588249 0.0007822669 9.513818e-01 9.735773e-01 9 109383423 109383551 129 - 1.450 1.447 -0.013
ENSG00000070159 E011 13.4770782 0.0014782829 4.056170e-01 5.492966e-01 9 109389233 109389236 4 - 1.120 1.196 0.272
ENSG00000070159 E012 28.8591997 0.0007089858 7.706466e-01 8.519125e-01 9 109389237 109389379 143 - 1.478 1.459 -0.063
ENSG00000070159 E013 19.2958921 0.0015906940 8.310377e-02 1.644170e-01 9 109391138 109391199 62 - 1.357 1.218 -0.487
ENSG00000070159 E014 16.5771954 0.0010832589 1.975191e-02 5.096391e-02 9 109391471 109391561 91 - 1.321 1.122 -0.704
ENSG00000070159 E015 0.2214452 0.0406050870 3.117449e-01   9 109392599 109392946 348 - 0.000 0.149 9.954
ENSG00000070159 E016 0.2214452 0.0406050870 3.117449e-01   9 109397634 109397770 137 - 0.000 0.149 9.954
ENSG00000070159 E017 23.0885252 0.0008646293 2.681847e-01 4.066234e-01 9 109404448 109404608 161 - 1.417 1.339 -0.272
ENSG00000070159 E018 36.2942341 0.0029177876 6.296672e-01 7.449901e-01 9 109406462 109406618 157 - 1.562 1.594 0.108
ENSG00000070159 E019 26.2011972 0.0115253622 9.932165e-01 9.999091e-01 9 109408321 109408377 57 - 1.438 1.442 0.013
ENSG00000070159 E020 23.9827611 0.0135745191 7.184017e-01 8.135079e-01 9 109409999 109410076 78 - 1.413 1.388 -0.087
ENSG00000070159 E021 38.8165364 0.0005801239 2.566589e-01 3.936406e-01 9 109410229 109410415 187 - 1.625 1.563 -0.214
ENSG00000070159 E022 36.5852798 0.0006313318 3.876368e-03 1.279607e-02 9 109420424 109420600 177 - 1.636 1.465 -0.583
ENSG00000070159 E023 14.6969434 0.0098694216 1.011440e-01 1.922197e-01 9 109422718 109422852 135 - 1.251 1.082 -0.604
ENSG00000070159 E024 31.3391593 0.0006651582 2.793960e-02 6.789299e-02 9 109426950 109427122 173 - 1.559 1.421 -0.476
ENSG00000070159 E025 16.9487294 0.0023856666 1.778896e-01 2.984867e-01 9 109428621 109428684 64 - 1.299 1.185 -0.404
ENSG00000070159 E026 20.9345550 0.0046065047 4.107426e-02 9.302325e-02 9 109433073 109433161 89 - 1.400 1.229 -0.594
ENSG00000070159 E027 20.9885362 0.0009262663 1.068576e-03 4.196140e-03 9 109436883 109436970 88 - 1.430 1.173 -0.900
ENSG00000070159 E028 24.8165824 0.0036432367 1.773798e-02 4.657078e-02 9 109438114 109438234 121 - 1.481 1.304 -0.613
ENSG00000070159 E029 18.8040604 0.0010515737 1.509287e-01 2.629314e-01 9 109445240 109445292 53 - 1.342 1.229 -0.398
ENSG00000070159 E030 16.0136203 0.0054603211 4.352659e-03 1.412975e-02 9 109448811 109448855 45 - 1.321 1.050 -0.965
ENSG00000070159 E031 3.4194928 0.0047777214 2.159566e-01 3.455462e-01 9 109448856 109451384 2529 - 0.555 0.740 0.794
ENSG00000070159 E032 14.1165613 0.0012604336 1.287081e-02 3.561434e-02 9 109454496 109454574 79 - 1.264 1.034 -0.825
ENSG00000070159 E033 13.7148818 0.0037825776 6.626639e-03 2.025512e-02 9 109457173 109457215 43 - 1.264 0.999 -0.951
ENSG00000070159 E034 16.9110224 0.0045836503 4.667205e-05 2.649015e-04 9 109457292 109457399 108 - 1.381 0.999 -1.361
ENSG00000070159 E035 15.9211010 0.0012790926 3.884880e-03 1.282126e-02 9 109463297 109463451 155 - 1.321 1.065 -0.910
ENSG00000070159 E036 6.6066613 0.0059901786 9.653727e-02 1.851664e-01 9 109498219 109498335 117 - 0.956 0.740 -0.837