ENSG00000070061

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000537196 ENSG00000070061 HEK293_OSMI2_2hA HEK293_TMG_2hB ELP1 protein_coding protein_coding 34.32196 22.93417 47.16956 1.753926 0.4687454 1.040034 12.395154 10.9197493 13.97129534 1.01290089 0.48319274 0.3552377 0.39531250 0.47510000 0.2960666667 -0.179033333 3.936572e-10 6.115982e-33 FALSE TRUE
ENST00000674535 ENSG00000070061 HEK293_OSMI2_2hA HEK293_TMG_2hB ELP1 protein_coding protein_coding 34.32196 22.93417 47.16956 1.753926 0.4687454 1.040034 6.764439 2.4806991 10.39636225 0.44039134 0.50580036 2.0628432 0.17750833 0.11120000 0.2204666667 0.109266667 4.289774e-02 6.115982e-33 FALSE TRUE
ENST00000675052 ENSG00000070061 HEK293_OSMI2_2hA HEK293_TMG_2hB ELP1 protein_coding protein_coding 34.32196 22.93417 47.16956 1.753926 0.4687454 1.040034 2.179151 1.7215792 3.31057269 0.20050171 0.75524231 0.9393437 0.06365417 0.07626667 0.0701000000 -0.006166667 9.153771e-01 6.115982e-33 FALSE TRUE
ENST00000675321 ENSG00000070061 HEK293_OSMI2_2hA HEK293_TMG_2hB ELP1 protein_coding nonsense_mediated_decay 34.32196 22.93417 47.16956 1.753926 0.4687454 1.040034 2.212924 0.0000000 4.29794963 0.00000000 0.12498837 8.7508576 0.04886250 0.00000000 0.0912000000 0.091200000 6.115982e-33 6.115982e-33 TRUE TRUE
ENST00000675335 ENSG00000070061 HEK293_OSMI2_2hA HEK293_TMG_2hB ELP1 protein_coding nonsense_mediated_decay 34.32196 22.93417 47.16956 1.753926 0.4687454 1.040034 2.067244 0.0000000 3.58335086 0.00000000 0.59908238 8.4891860 0.04962083 0.00000000 0.0757000000 0.075700000 7.655664e-16 6.115982e-33 FALSE TRUE
ENST00000676162 ENSG00000070061 HEK293_OSMI2_2hA HEK293_TMG_2hB ELP1 protein_coding processed_transcript 34.32196 22.93417 47.16956 1.753926 0.4687454 1.040034 1.404457 4.7115470 0.02728862 1.24045078 0.02728862 -6.9843802 0.05659167 0.20266667 0.0005666667 -0.202100000 1.454924e-14 6.115982e-33 FALSE TRUE
MSTRG.33210.48 ENSG00000070061 HEK293_OSMI2_2hA HEK293_TMG_2hB ELP1 protein_coding   34.32196 22.93417 47.16956 1.753926 0.4687454 1.040034 1.061285 0.2603184 3.04084902 0.06804233 0.91719894 3.4964790 0.02600833 0.01186667 0.0647666667 0.052900000 1.232289e-02 6.115982e-33 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000070061 E001 0.9650892 0.0162601527 9.916424e-02 1.892032e-01 9 108866898 108867515 618 - 0.162 0.457 2.039
ENSG00000070061 E002 0.1515154 0.0435648813 1.000000e+00   9 108867516 108867516 1 - 0.089 0.000 -10.759
ENSG00000070061 E003 0.7447899 0.0483108520 7.665210e-01 8.490011e-01 9 108867517 108867537 21 - 0.226 0.285 0.448
ENSG00000070061 E004 0.7447899 0.0483108520 7.665210e-01 8.490011e-01 9 108867538 108867539 2 - 0.226 0.285 0.448
ENSG00000070061 E005 17.8390702 0.0269844893 5.224963e-01 6.563058e-01 9 108867540 108868172 633 - 1.234 1.325 0.319
ENSG00000070061 E006 72.4773903 0.0101697193 1.592385e-09 2.274199e-08 9 108868173 108868445 273 - 1.662 2.062 1.346
ENSG00000070061 E007 77.1587662 0.0014287671 1.360515e-10 2.349681e-09 9 108868446 108868549 104 - 1.754 2.041 0.965
ENSG00000070061 E008 80.7283322 0.0032373215 1.179233e-10 2.057299e-09 9 108868550 108868640 91 - 1.756 2.069 1.054
ENSG00000070061 E009 50.9858997 0.0028688104 5.792906e-10 8.980023e-09 9 108868641 108868650 10 - 1.542 1.889 1.176
ENSG00000070061 E010 97.7561731 0.0048491165 1.676359e-13 4.622051e-12 9 108868651 108868670 20 - 1.808 2.179 1.246
ENSG00000070061 E011 117.8663084 0.0034482567 1.751097e-20 1.184786e-18 9 108868671 108868720 50 - 1.867 2.277 1.373
ENSG00000070061 E012 512.9530988 0.0073473379 5.308942e-13 1.360610e-11 9 108868721 108869030 310 - 2.549 2.871 1.073
ENSG00000070061 E013 306.7614103 0.0031601299 1.082399e-15 4.066984e-14 9 108869031 108869114 84 - 2.352 2.628 0.922
ENSG00000070061 E014 306.4692895 0.0023552859 3.015207e-18 1.564563e-16 9 108869115 108869182 68 - 2.353 2.626 0.911
ENSG00000070061 E015 7.1376338 0.0023223521 8.869730e-04 3.568518e-03 9 108870454 108870553 100 - 0.706 1.103 1.515
ENSG00000070061 E016 3.3775368 0.0389188765 3.832936e-01 5.274867e-01 9 108872661 108872801 141 - 0.570 0.716 0.629
ENSG00000070061 E017 288.0526831 0.0020083629 3.090139e-15 1.097109e-13 9 108874895 108874963 69 - 2.343 2.585 0.807
ENSG00000070061 E018 167.5516996 0.0039738734 1.594354e-08 1.892753e-07 9 108874964 108874970 7 - 2.111 2.350 0.799
ENSG00000070061 E019 0.9747559 0.2664204691 5.330498e-01 6.652965e-01 9 108874971 108875632 662 - 0.331 0.169 -1.263
ENSG00000070061 E020 0.4545463 0.6733112087 5.563690e-01 6.850320e-01 9 108875633 108875735 103 - 0.227 0.000 -12.358
ENSG00000070061 E021 0.4482035 0.0293531171 2.668912e-01 4.051486e-01 9 108875736 108876701 966 - 0.225 0.000 -12.344
ENSG00000070061 E022 0.0000000       9 108876898 108876986 89 -      
ENSG00000070061 E023 0.4482035 0.0293531171 2.668912e-01 4.051486e-01 9 108876987 108877612 626 - 0.225 0.000 -12.344
ENSG00000070061 E024 0.1515154 0.0435648813 1.000000e+00   9 108877613 108877800 188 - 0.089 0.000 -10.759
ENSG00000070061 E025 1.3317202 0.0099164986 9.256318e-02 1.791252e-01 9 108877801 108877994 194 - 0.225 0.523 1.778
ENSG00000070061 E026 348.2844462 0.0001947203 4.738765e-26 5.678336e-24 9 108877995 108878149 155 - 2.440 2.655 0.716
ENSG00000070061 E027 316.5723449 0.0001519169 4.716195e-12 1.035411e-10 9 108878623 108878750 128 - 2.429 2.577 0.494
ENSG00000070061 E028 0.0000000       9 108878751 108878988 238 -      
ENSG00000070061 E029 176.2147137 0.0002349138 5.060434e-04 2.182945e-03 9 108879446 108879460 15 - 2.196 2.298 0.342
ENSG00000070061 E030 277.5377888 0.0002053186 5.412495e-10 8.432409e-09 9 108879461 108879557 97 - 2.375 2.519 0.480
ENSG00000070061 E031 268.3592056 0.0001765619 2.982476e-06 2.233020e-05 9 108880052 108880165 114 - 2.374 2.485 0.370
ENSG00000070061 E032 2.0553816 0.0950622779 5.430264e-01 6.736937e-01 9 108880166 108880943 778 - 0.514 0.383 -0.681
ENSG00000070061 E033 0.8846520 0.0135566652 3.737542e-01 5.181574e-01 9 108880944 108881662 719 - 0.329 0.166 -1.282
ENSG00000070061 E034 6.0523430 0.0417716950 4.576880e-01 5.980042e-01 9 108881663 108881704 42 - 0.793 0.903 0.428
ENSG00000070061 E035 184.6037315 0.0016060471 8.141585e-04 3.309798e-03 9 108881705 108881765 61 - 2.211 2.326 0.384
ENSG00000070061 E036 177.4292181 0.0009461161 9.659910e-04 3.841799e-03 9 108882125 108882187 63 - 2.197 2.303 0.355
ENSG00000070061 E037 0.9631146 0.0148279123 9.858882e-01 9.951915e-01 9 108882188 108882562 375 - 0.280 0.286 0.042
ENSG00000070061 E038 0.1472490 0.0434416843 1.000000e+00   9 108884796 108884912 117 - 0.089 0.000 -10.758
ENSG00000070061 E039 0.2998086 0.0289193837 6.056727e-01   9 108885768 108885872 105 - 0.089 0.166 1.039
ENSG00000070061 E040 183.0077240 0.0011879794 2.458742e-02 6.102627e-02 9 108889332 108889393 62 - 2.223 2.298 0.251
ENSG00000070061 E041 0.0000000       9 108889645 108889684 40 -      
ENSG00000070061 E042 307.7752813 0.0013059438 7.471196e-02 1.510754e-01 9 108891203 108891404 202 - 2.457 2.512 0.183
ENSG00000070061 E043 226.0164789 0.0015850835 3.740324e-01 5.184474e-01 9 108892986 108893083 98 - 2.332 2.368 0.118
ENSG00000070061 E044 1.2168277 0.0106667777 1.865679e-01 3.094362e-01 9 108893084 108893942 859 - 0.413 0.166 -1.766
ENSG00000070061 E045 230.6304563 0.0001708801 3.346113e-01 4.783585e-01 9 108893943 108894066 124 - 2.340 2.370 0.098
ENSG00000070061 E046 0.6727692 0.0741021611 4.987466e-01 6.351556e-01 9 108894067 108894088 22 - 0.163 0.287 1.041
ENSG00000070061 E047 244.2827273 0.0002040142 1.022854e-01 1.939994e-01 9 108896496 108896644 149 - 2.358 2.403 0.149
ENSG00000070061 E048 2.6111940 0.0062258269 1.614431e-01 2.769821e-01 9 108896645 108896890 246 - 0.621 0.380 -1.181
ENSG00000070061 E049 2.7667734 0.0064214730 6.364112e-01 7.504431e-01 9 108896891 108896952 62 - 0.596 0.523 -0.338
ENSG00000070061 E050 181.7109453 0.0001932310 2.825176e-01 4.225191e-01 9 108896953 108897038 86 - 2.257 2.233 -0.081
ENSG00000070061 E051 220.1594805 0.0002265690 2.279272e-01 3.599573e-01 9 108897148 108897283 136 - 2.339 2.314 -0.085
ENSG00000070061 E052 90.3968591 0.0026407140 3.657972e-01 5.101004e-01 9 108897284 108897285 2 - 1.958 1.918 -0.134
ENSG00000070061 E053 3.9672555 0.0159617076 2.896339e-01 4.303450e-01 9 108897286 108898135 850 - 0.743 0.579 -0.700
ENSG00000070061 E054 0.5997190 0.1595062107 1.967365e-01 3.221662e-01 9 108898136 108898234 99 - 0.281 0.000 -12.762
ENSG00000070061 E055 0.7406253 0.0154961605 9.372798e-02 1.809486e-01 9 108898235 108898501 267 - 0.329 0.000 -13.080
ENSG00000070061 E056 140.3821415 0.0043661486 2.654570e-01 4.035114e-01 9 108898502 108898581 80 - 2.153 2.103 -0.165
ENSG00000070061 E057 171.6854824 0.0005897234 7.549392e-02 1.523010e-01 9 108898671 108898749 79 - 2.241 2.192 -0.164
ENSG00000070061 E058 191.1311475 0.0010324593 5.243568e-04 2.250721e-03 9 108899822 108899895 74 - 2.306 2.202 -0.348
ENSG00000070061 E059 225.1934606 0.0002483714 4.251026e-08 4.651405e-07 9 108900260 108900375 116 - 2.387 2.249 -0.460
ENSG00000070061 E060 188.9454543 0.0017557278 3.182434e-07 2.928844e-06 9 108901425 108901530 106 - 2.322 2.151 -0.573
ENSG00000070061 E061 151.2651502 0.0009246740 2.358502e-05 1.438681e-04 9 108901628 108901681 54 - 2.217 2.079 -0.463
ENSG00000070061 E062 199.3566174 0.0003797424 6.748699e-07 5.813308e-06 9 108902839 108902942 104 - 2.334 2.199 -0.450
ENSG00000070061 E063 199.6263117 0.0002292681 5.837814e-11 1.071144e-09 9 108903563 108903658 96 - 2.347 2.170 -0.591
ENSG00000070061 E064 100.4038538 0.0007777107 4.830052e-06 3.451935e-05 9 108903659 108903669 11 - 2.051 1.871 -0.604
ENSG00000070061 E065 243.9842276 0.0045942141 1.231512e-05 8.012715e-05 9 108906303 108906485 183 - 2.433 2.251 -0.606
ENSG00000070061 E066 2.8202308 0.0135878507 9.843126e-01 9.942828e-01 9 108906486 108908304 1819 - 0.571 0.580 0.039
ENSG00000070061 E067 187.2798437 0.0022907114 9.827997e-05 5.139068e-04 9 108908305 108908404 100 - 2.307 2.168 -0.465
ENSG00000070061 E068 255.1571304 0.0013366389 1.036873e-09 1.533551e-08 9 108911010 108911180 171 - 2.453 2.274 -0.597
ENSG00000070061 E069 0.7384352 0.0172567610 9.412606e-02 1.815839e-01 9 108911181 108911211 31 - 0.329 0.000 -13.080
ENSG00000070061 E070 287.6050129 0.0020122633 5.952481e-10 9.206300e-09 9 108912264 108912494 231 - 2.508 2.315 -0.645
ENSG00000070061 E071 156.3575054 0.0005692245 1.336369e-08 1.609173e-07 9 108916204 108916297 94 - 2.241 2.060 -0.606
ENSG00000070061 E072 0.7708142 0.0153787590 5.293629e-01 6.621563e-01 9 108916298 108917546 1249 - 0.280 0.166 -0.958
ENSG00000070061 E073 181.5380795 0.0002521914 1.316186e-15 4.905517e-14 9 108917547 108917662 116 - 2.319 2.086 -0.779
ENSG00000070061 E074 101.3056226 0.0002826426 4.089474e-10 6.511502e-09 9 108917663 108917670 8 - 2.071 1.831 -0.808
ENSG00000070061 E075 48.4063716 0.0011312380 4.376344e-13 1.138072e-11 9 108917671 108918810 1140 - 1.797 1.352 -1.523
ENSG00000070061 E076 170.3402311 0.0001992644 1.801958e-17 8.547210e-16 9 108918811 108918901 91 - 2.298 2.042 -0.855
ENSG00000070061 E077 12.6600449 0.0024893096 8.115114e-03 2.407504e-02 9 108918902 108919252 351 - 1.203 0.928 -1.003
ENSG00000070061 E078 174.5375785 0.0042283181 2.523539e-10 4.151774e-09 9 108919253 108919349 97 - 2.312 2.031 -0.940
ENSG00000070061 E079 0.4375944 0.0267153942 2.666397e-01 4.048674e-01 9 108920316 108920690 375 - 0.225 0.000 -12.343
ENSG00000070061 E080 0.4355181 0.6317748181 5.439836e-01 6.745036e-01 9 108920691 108920783 93 - 0.224 0.000 -12.333
ENSG00000070061 E081 2.1650668 0.0143833609 3.549658e-01 4.993072e-01 9 108920784 108922841 2058 - 0.543 0.380 -0.832
ENSG00000070061 E082 181.4124133 0.0080252364 3.898833e-08 4.296441e-07 9 108922842 108922927 86 - 2.333 2.035 -0.996
ENSG00000070061 E083 177.9995546 0.0118008096 1.603230e-07 1.565765e-06 9 108926523 108926595 73 - 2.332 2.003 -1.098
ENSG00000070061 E084 117.2919667 0.0200700949 2.271890e-05 1.390320e-04 9 108926596 108926603 8 - 2.154 1.815 -1.140
ENSG00000070061 E085 186.0453752 0.0108586273 1.258280e-06 1.023035e-05 9 108927372 108927453 82 - 2.343 2.054 -0.966
ENSG00000070061 E086 210.2806739 0.0085244352 9.308194e-06 6.231129e-05 9 108929769 108929921 153 - 2.383 2.147 -0.786
ENSG00000070061 E087 136.2682736 0.0115804010 2.572511e-04 1.205496e-03 9 108930997 108931056 60 - 2.194 1.966 -0.766
ENSG00000070061 E088 78.4383156 0.0128840644 3.794728e-04 1.695239e-03 9 108931057 108931080 24 - 1.964 1.710 -0.857
ENSG00000070061 E089 123.5849577 0.0127651598 1.789927e-04 8.736445e-04 9 108931081 108931199 119 - 2.157 1.914 -0.816
ENSG00000070061 E090 47.6578110 0.0046920183 1.500040e-08 1.789647e-07 9 108931200 108931201 2 - 1.780 1.394 -1.315
ENSG00000070061 E091 29.9599735 0.0007976503 3.229696e-14 9.857520e-13 9 108931202 108933863 2662 - 1.617 0.994 -2.186
ENSG00000070061 E092 154.3739709 0.0048801761 1.475418e-08 1.763047e-07 9 108933864 108934063 200 - 2.257 1.989 -0.898
ENSG00000070061 E093 39.8958344 0.0010170965 2.644888e-04 1.234974e-03 9 108934064 108934328 265 - 1.664 1.441 -0.762
ENSG00000070061 E094 2.2217740 0.0064758190 8.283273e-02 1.639836e-01 9 108934367 108934449 83 - 0.596 0.286 -1.660