ENSG00000066933

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000356056 ENSG00000066933 HEK293_OSMI2_2hA HEK293_TMG_2hB MYO9A protein_coding protein_coding 4.346261 1.258304 6.266522 0.1878506 0.2724465 2.307065 2.0947657 0.88212274 2.8993736 0.03901852 0.03407909 1.705394 0.54147500 0.73120000 0.46393333 -0.267266667 0.11398684 0.01080098 FALSE TRUE
ENST00000561618 ENSG00000066933 HEK293_OSMI2_2hA HEK293_TMG_2hB MYO9A protein_coding protein_coding 4.346261 1.258304 6.266522 0.1878506 0.2724465 2.307065 0.9709956 0.18947889 1.5678825 0.11323422 0.09129305 2.983682 0.21431667 0.13286667 0.25083333 0.117966667 0.45740617 0.01080098 FALSE TRUE
ENST00000568042 ENSG00000066933 HEK293_OSMI2_2hA HEK293_TMG_2hB MYO9A protein_coding protein_coding 4.346261 1.258304 6.266522 0.1878506 0.2724465 2.307065 0.2103122 0.06656165 0.3091062 0.06656165 0.11371831 2.059343 0.06112917 0.04466667 0.05093333 0.006266667 0.86354980 0.01080098 FALSE TRUE
ENST00000569314 ENSG00000066933 HEK293_OSMI2_2hA HEK293_TMG_2hB MYO9A protein_coding protein_coding 4.346261 1.258304 6.266522 0.1878506 0.2724465 2.307065 0.2158089 0.00000000 0.4098967 0.00000000 0.24666020 5.391963 0.03130000 0.00000000 0.06233333 0.062333333 0.50642270 0.01080098 FALSE FALSE
MSTRG.11154.2 ENSG00000066933 HEK293_OSMI2_2hA HEK293_TMG_2hB MYO9A protein_coding   4.346261 1.258304 6.266522 0.1878506 0.2724465 2.307065 0.2647314 0.00000000 0.3720598 0.00000000 0.01548143 5.255727 0.03906250 0.00000000 0.05980000 0.059800000 0.01080098 0.01080098 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000066933 E001 247.6329740 0.0021791517 4.139846e-37 1.186508e-34 15 71822291 71825991 3701 - 2.202 2.575 1.242
ENSG00000066933 E002 7.2172252 0.0367446037 1.223138e-01 2.232455e-01 15 71825992 71826048 57 - 0.788 1.033 0.931
ENSG00000066933 E003 21.9799172 0.0008554094 1.633452e-05 1.033679e-04 15 71826049 71826271 223 - 1.180 1.531 1.222
ENSG00000066933 E004 32.0069011 0.0006120944 1.552606e-07 1.520086e-06 15 71826272 71826579 308 - 1.334 1.691 1.227
ENSG00000066933 E005 13.7828529 0.0013179108 1.013067e-04 5.278834e-04 15 71826580 71826610 31 - 0.971 1.357 1.382
ENSG00000066933 E006 23.0122478 0.0008370844 2.686829e-04 1.252212e-03 15 71826611 71826733 123 - 1.215 1.514 1.038
ENSG00000066933 E007 43.9315647 0.0006202600 8.087601e-02 1.609086e-01 15 71826734 71827039 306 - 1.545 1.668 0.418
ENSG00000066933 E008 10.8443321 0.0018347852 4.387409e-01 5.805921e-01 15 71827040 71827043 4 - 1.027 0.950 -0.286
ENSG00000066933 E009 18.4304009 0.0010434316 9.800643e-01 9.915581e-01 15 71827884 71827933 50 - 1.211 1.226 0.053
ENSG00000066933 E010 24.4949809 0.0007857900 5.613017e-01 6.891614e-01 15 71827934 71828026 93 - 1.317 1.382 0.224
ENSG00000066933 E011 23.8020637 0.0007686613 5.822774e-01 7.066578e-01 15 71830109 71830205 97 - 1.307 1.370 0.218
ENSG00000066933 E012 27.7049819 0.0008209991 2.088066e-01 3.370838e-01 15 71830206 71830311 106 - 1.356 1.468 0.387
ENSG00000066933 E013 1.6963530 0.0090863335 3.189747e-01 4.620045e-01 15 71847415 71847468 54 - 0.416 0.220 -1.284
ENSG00000066933 E014 24.2962502 0.0007727379 6.696399e-01 7.763834e-01 15 71848845 71848968 124 - 1.317 1.370 0.182
ENSG00000066933 E015 26.8703299 0.0071746630 1.676669e-01 2.851550e-01 15 71850036 71850167 132 - 1.397 1.288 -0.377
ENSG00000066933 E016 22.1587613 0.0082972653 2.235976e-01 3.546957e-01 15 71851253 71851358 106 - 1.314 1.209 -0.370
ENSG00000066933 E017 18.4909333 0.0009810934 8.796899e-01 9.267839e-01 15 71852132 71852260 129 - 1.211 1.243 0.111
ENSG00000066933 E018 0.1515154 0.0421996723 1.000000e+00   15 71852261 71852356 96 - 0.065 0.000 -9.496
ENSG00000066933 E019 28.2849158 0.0007185385 6.715708e-01 7.777667e-01 15 71854377 71854569 193 - 1.397 1.382 -0.053
ENSG00000066933 E020 15.5492667 0.0017792092 1.650875e-01 2.818106e-01 15 71859735 71859796 62 - 1.171 1.037 -0.482
ENSG00000066933 E021 21.6439088 0.0009604633 7.724792e-01 8.531429e-01 15 71862500 71862611 112 - 1.282 1.274 -0.028
ENSG00000066933 E022 13.3115839 0.0013322276 7.010406e-01 8.003673e-01 15 71875791 71875838 48 - 1.088 1.063 -0.092
ENSG00000066933 E023 21.8130755 0.0026821278 7.522412e-01 8.385053e-01 15 71878040 71878231 192 - 1.286 1.275 -0.039
ENSG00000066933 E024 16.9111874 0.0186275179 1.317408e-01 2.365453e-01 15 71879721 71879837 117 - 1.211 1.040 -0.614
ENSG00000066933 E025 29.4692978 0.0008631706 3.726438e-01 5.170898e-01 15 71880335 71880558 224 - 1.421 1.370 -0.179
ENSG00000066933 E026 20.1026468 0.0009848037 5.461490e-01 6.763758e-01 15 71883594 71883700 107 - 1.264 1.226 -0.133
ENSG00000066933 E027 15.2840513 0.0041056886 2.677006e-01 4.060356e-01 15 71883701 71883736 36 - 1.166 1.062 -0.373
ENSG00000066933 E028 21.9071363 0.0011757783 1.263658e-01 2.290826e-01 15 71888004 71888116 113 - 1.314 1.190 -0.434
ENSG00000066933 E029 0.5181333 0.0214182076 5.758574e-01 7.013768e-01 15 71888117 71888607 491 - 0.121 0.220 1.039
ENSG00000066933 E030 2.9217135 0.0077089687 2.609424e-01 3.985362e-01 15 71889472 71892964 3493 - 0.572 0.365 -1.049
ENSG00000066933 E031 21.6826803 0.0009404776 3.301254e-01 4.737185e-01 15 71892965 71893177 213 - 1.296 1.226 -0.248
ENSG00000066933 E032 0.0000000       15 71893462 71893678 217 -      
ENSG00000066933 E033 22.0802984 0.0008593926 7.885326e-02 1.576807e-01 15 71893679 71893778 100 - 1.317 1.172 -0.513
ENSG00000066933 E034 2.3981784 0.0064315261 2.428100e-01 3.774761e-01 15 71896890 71897460 571 - 0.416 0.633 1.038
ENSG00000066933 E035 54.6115975 0.0362837493 6.065545e-02 1.277323e-01 15 71897461 71898108 648 - 1.702 1.536 -0.567
ENSG00000066933 E036 54.7391770 0.0092646887 2.668233e-06 2.020097e-05 15 71898109 71898838 730 - 1.730 1.359 -1.270
ENSG00000066933 E037 22.7899206 0.0087765719 4.359763e-03 1.414708e-02 15 71898839 71899032 194 - 1.353 1.063 -1.026
ENSG00000066933 E038 21.8341652 0.0020522155 4.564511e-03 1.472262e-02 15 71899687 71900006 320 - 1.330 1.063 -0.950
ENSG00000066933 E039 9.8811414 0.0019897011 4.216967e-02 9.503601e-02 15 71901191 71901340 150 - 1.013 0.749 -1.013
ENSG00000066933 E040 12.7292624 0.0022103339 7.241536e-03 2.185201e-02 15 71902941 71903063 123 - 1.126 0.797 -1.230
ENSG00000066933 E041 12.5550441 0.0014010228 2.248956e-02 5.670189e-02 15 71903929 71904010 82 - 1.110 0.841 -1.002
ENSG00000066933 E042 8.5984453 0.0019582020 6.507523e-01 7.617683e-01 15 71904011 71904039 29 - 0.924 0.880 -0.164
ENSG00000066933 E043 10.5201833 0.0015993044 3.606157e-01 5.049414e-01 15 71904926 71905006 81 - 1.014 0.917 -0.361
ENSG00000066933 E044 11.8714502 0.0185939548 6.336064e-02 1.322902e-01 15 71916370 71916492 123 - 1.088 0.840 -0.924
ENSG00000066933 E045 7.6819448 0.0473219514 1.252401e-02 3.479448e-02 15 71933670 71933709 40 - 0.947 0.473 -1.996
ENSG00000066933 E046 0.3729606 0.0268609485 3.171756e-01 4.600247e-01 15 71935140 71935340 201 - 0.065 0.220 2.040
ENSG00000066933 E047 11.2385236 0.0036981714 1.198814e-03 4.636446e-03 15 71935341 71935442 102 - 1.088 0.633 -1.769
ENSG00000066933 E048 8.0164724 0.0241439054 1.224893e-01 2.234969e-01 15 71935443 71935484 42 - 0.932 0.695 -0.933
ENSG00000066933 E049 0.2214452 0.0388475795 1.086678e-01   15 71938763 71938851 89 - 0.000 0.220 12.562
ENSG00000066933 E050 11.0198602 0.0016172965 1.430879e-03 5.409722e-03 15 71938852 71938927 76 - 1.076 0.633 -1.728
ENSG00000066933 E051 0.0000000       15 71938928 71939011 84 -      
ENSG00000066933 E052 0.0000000       15 71950234 71950391 158 -      
ENSG00000066933 E053 0.1472490 0.0428559676 1.000000e+00   15 71951702 71951731 30 - 0.065 0.000 -9.494
ENSG00000066933 E054 0.2955422 0.0292061203 3.187016e-01   15 71951732 71951776 45 - 0.065 0.220 2.035
ENSG00000066933 E055 13.7504326 0.0013395585 2.276569e-04 1.081929e-03 15 71951777 71951896 120 - 1.171 0.695 -1.804
ENSG00000066933 E056 0.1482932 0.0417193385 1.096370e-01   15 71953644 71953692 49 - 0.000 0.220 12.537
ENSG00000066933 E057 0.0000000       15 71958500 71958516 17 -      
ENSG00000066933 E058 0.0000000       15 71958517 71959900 1384 -      
ENSG00000066933 E059 17.1014821 0.0011389627 1.385340e-02 3.789358e-02 15 71959901 71960096 196 - 1.232 0.981 -0.906
ENSG00000066933 E060 0.1515154 0.0421996723 1.000000e+00   15 71960097 71960403 307 - 0.065 0.000 -9.496
ENSG00000066933 E061 15.4332298 0.0011761377 1.080393e-02 3.069636e-02 15 71967984 71968125 142 - 1.194 0.917 -1.011
ENSG00000066933 E062 14.3694127 0.0012025884 5.148775e-02 1.117934e-01 15 71978171 71978292 122 - 1.156 0.950 -0.753
ENSG00000066933 E063 11.6814642 0.0029719873 1.804145e-01 3.017079e-01 15 71991103 71991237 135 - 1.064 0.917 -0.548
ENSG00000066933 E064 15.0844646 0.0019324954 1.072219e-01 2.014246e-01 15 71994469 71994585 117 - 1.171 1.010 -0.582
ENSG00000066933 E065 16.2140959 0.0011605572 3.662644e-01 5.105959e-01 15 71999851 71999940 90 - 1.185 1.109 -0.269
ENSG00000066933 E066 17.2577400 0.0010692647 8.507508e-02 1.675247e-01 15 72007826 72007952 127 - 1.224 1.062 -0.578
ENSG00000066933 E067 9.5652667 0.0065389906 7.502556e-03 2.251872e-02 15 72010350 72010377 28 - 1.020 0.633 -1.525
ENSG00000066933 E068 11.0065213 0.0026623005 5.182980e-03 1.642687e-02 15 72010378 72010447 70 - 1.071 0.695 -1.444
ENSG00000066933 E069 0.0000000       15 72010448 72010450 3 -      
ENSG00000066933 E070 5.2338905 0.0900781987 1.526911e-01 2.653344e-01 15 72019039 72019095 57 - 0.776 0.479 -1.303
ENSG00000066933 E071 12.4112277 0.0014479732 2.284577e-01 3.605757e-01 15 72020918 72021017 100 - 1.076 0.950 -0.464
ENSG00000066933 E072 10.7725004 0.0016544681 1.063758e-01 2.001924e-01 15 72027731 72027793 63 - 1.033 0.841 -0.723
ENSG00000066933 E073 13.6210367 0.0013018454 1.033380e-02 2.959138e-02 15 72032494 72032588 95 - 1.141 0.841 -1.114
ENSG00000066933 E074 24.5473364 0.0009304412 4.590892e-07 4.090156e-06 15 72045724 72046141 418 - 1.405 0.881 -1.888
ENSG00000066933 E075 14.1321208 0.0027982052 3.476821e-02 8.120140e-02 15 72046142 72046343 202 - 1.151 0.917 -0.860
ENSG00000066933 E076 20.5961411 0.0010215456 4.021679e-02 9.143215e-02 15 72046344 72046634 291 - 1.293 1.110 -0.650
ENSG00000066933 E077 0.0000000       15 72046635 72046637 3 -      
ENSG00000066933 E078 3.9100853 0.0750306473 6.934574e-01 7.944884e-01 15 72117680 72117684 5 - 0.642 0.563 -0.350
ENSG00000066933 E079 6.5830576 0.0698364242 2.598042e-01 3.972616e-01 15 72117685 72117883 199 - 0.853 0.634 -0.890
ENSG00000066933 E080 1.0457324 0.0195256179 1.564124e-01 2.703414e-01 15 72117884 72117914 31 - 0.327 0.000 -12.247
ENSG00000066933 E081 3.0429262 0.0050549744 5.145562e-02 1.117416e-01 15 72117915 72118150 236 - 0.608 0.220 -2.210
ENSG00000066933 E082 0.5975289 0.0247030979 4.056260e-01 5.492966e-01 15 72118157 72118223 67 - 0.216 0.000 -11.471
ENSG00000066933 E083 0.7384352 0.0170229837 2.873677e-01 4.278637e-01 15 72118305 72118577 273 - 0.256 0.000 -11.787