ENSG00000066651

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000334379 ENSG00000066651 HEK293_OSMI2_2hA HEK293_TMG_2hB TRMT11 protein_coding protein_coding 11.73844 4.956594 16.79878 0.4176295 0.5355708 1.758886 3.7399716 3.49889892 4.9846435 0.28267746 0.3132524 0.5093633 0.40542083 0.706633333 0.29826667 -0.40836667 6.427435e-12 6.427435e-12 FALSE TRUE
MSTRG.28923.13 ENSG00000066651 HEK293_OSMI2_2hA HEK293_TMG_2hB TRMT11 protein_coding   11.73844 4.956594 16.79878 0.4176295 0.5355708 1.758886 1.7008293 0.03520354 1.5534442 0.03520354 0.8217256 5.1121482 0.13515833 0.008366667 0.09003333 0.08166667 5.314494e-01 6.427435e-12 TRUE TRUE
MSTRG.28923.20 ENSG00000066651 HEK293_OSMI2_2hA HEK293_TMG_2hB TRMT11 protein_coding   11.73844 4.956594 16.79878 0.4176295 0.5355708 1.758886 2.4250979 0.00000000 4.0992168 0.00000000 0.8421600 8.6827196 0.13054583 0.000000000 0.24386667 0.24386667 2.207296e-10 6.427435e-12 TRUE TRUE
MSTRG.28923.5 ENSG00000066651 HEK293_OSMI2_2hA HEK293_TMG_2hB TRMT11 protein_coding   11.73844 4.956594 16.79878 0.4176295 0.5355708 1.758886 0.5329854 0.38217683 0.4176999 0.19181345 0.2213489 0.1250947 0.05483333 0.072200000 0.02493333 -0.04726667 7.832685e-01 6.427435e-12 TRUE TRUE
MSTRG.28923.7 ENSG00000066651 HEK293_OSMI2_2hA HEK293_TMG_2hB TRMT11 protein_coding   11.73844 4.956594 16.79878 0.4176295 0.5355708 1.758886 0.3338353 0.00000000 1.1453181 0.00000000 0.1394702 6.8521463 0.02240417 0.000000000 0.06876667 0.06876667 2.659036e-07 6.427435e-12 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000066651 E001 0.0000000       6 125986012 125986054 43 +      
ENSG00000066651 E002 0.0000000       6 125986055 125986058 4 +      
ENSG00000066651 E003 0.0000000       6 125986059 125986138 80 +      
ENSG00000066651 E004 0.0000000       6 125986139 125986431 293 +      
ENSG00000066651 E005 0.2966881 0.0290785164 6.815591e-01   6 125986432 125986460 29 + 0.142 0.000 -11.161
ENSG00000066651 E006 0.4482035 0.0274702523 4.061357e-01 5.497815e-01 6 125986461 125986463 3 + 0.199 0.000 -13.941
ENSG00000066651 E007 1.3662668 0.0096730117 2.699017e-01 4.084585e-01 6 125986464 125986478 15 + 0.407 0.189 -1.503
ENSG00000066651 E008 3.6192713 0.0050595474 3.670934e-01 5.114675e-01 6 125986479 125986506 28 + 0.592 0.730 0.589
ENSG00000066651 E009 5.9347207 0.0028459178 4.592707e-01 5.994858e-01 6 125986507 125986525 19 + 0.781 0.878 0.381
ENSG00000066651 E010 8.5220685 0.0019677238 9.092000e-01 9.463191e-01 6 125986526 125986539 14 + 0.951 0.937 -0.054
ENSG00000066651 E011 14.2180204 0.0012192055 7.537172e-02 1.521157e-01 6 125986540 125986550 11 + 1.197 1.013 -0.664
ENSG00000066651 E012 14.1792986 0.0012053301 4.178866e-02 9.434121e-02 6 125986551 125986552 2 + 1.202 0.989 -0.770
ENSG00000066651 E013 29.5910374 0.0007733371 1.647577e-02 4.378724e-02 6 125986553 125986622 70 + 1.494 1.316 -0.619
ENSG00000066651 E014 2.4637295 0.0318332389 6.728640e-01 7.787217e-01 6 125986623 125986690 68 + 0.495 0.571 0.356
ENSG00000066651 E015 3.0603254 0.0051470063 3.123766e-01 4.549277e-01 6 125986691 125986773 83 + 0.522 0.684 0.720
ENSG00000066651 E016 0.2934659 0.0289869134 4.479012e-01   6 125986914 125987189 276 + 0.077 0.189 1.494
ENSG00000066651 E017 30.4594285 0.0014201167 4.541073e-02 1.009437e-01 6 125993757 125993792 36 + 1.497 1.349 -0.512
ENSG00000066651 E018 24.7425405 0.0007642330 7.010958e-02 1.435447e-01 6 125993793 125993800 8 + 1.412 1.267 -0.503
ENSG00000066651 E019 29.6692751 0.0007071239 5.156791e-03 1.635509e-02 6 125993801 125993822 22 + 1.502 1.292 -0.728
ENSG00000066651 E020 47.6116611 0.0004868939 1.399398e-03 5.304994e-03 6 125995967 125996040 74 + 1.697 1.507 -0.648
ENSG00000066651 E021 52.5310251 0.0006666506 2.704243e-02 6.608415e-02 6 125998053 125998134 82 + 1.724 1.600 -0.419
ENSG00000066651 E022 57.4854362 0.0004607812 1.262252e-01 2.289025e-01 6 125998223 125998315 93 + 1.751 1.671 -0.271
ENSG00000066651 E023 69.7355570 0.0008635414 1.907609e-01 3.147017e-01 6 125998550 125998684 135 + 1.830 1.766 -0.215
ENSG00000066651 E024 83.1016331 0.0004903913 9.218649e-02 1.785403e-01 6 125999457 125999613 157 + 1.911 1.837 -0.247
ENSG00000066651 E025 6.3162883 0.0027281270 5.206301e-01 6.545827e-01 6 126006842 126006954 113 + 0.795 0.879 0.328
ENSG00000066651 E026 60.3172647 0.0013158525 5.572640e-01 6.857150e-01 6 126008392 126008472 81 + 1.745 1.774 0.097
ENSG00000066651 E027 0.4439371 0.0215808633 4.041744e-01 5.478792e-01 6 126008473 126008480 8 + 0.199 0.000 -13.962
ENSG00000066651 E028 5.0396620 0.0254468300 7.823748e-01 8.602603e-01 6 126008657 126008745 89 + 0.737 0.773 0.147
ENSG00000066651 E029 0.7384472 0.0388720469 5.176207e-01 6.519626e-01 6 126009335 126009434 100 + 0.199 0.320 0.905
ENSG00000066651 E030 10.0040419 0.0017729033 7.415904e-02 1.501962e-01 6 126010925 126011252 328 + 0.942 1.133 0.698
ENSG00000066651 E031 91.3963885 0.0003202616 9.569443e-02 1.839310e-01 6 126011253 126011417 165 + 1.909 1.973 0.216
ENSG00000066651 E032 69.9165069 0.0003609764 6.900696e-01 7.918617e-01 6 126012771 126012843 73 + 1.806 1.824 0.060
ENSG00000066651 E033 43.3264664 0.0007273684 6.558157e-01 7.656423e-01 6 126012844 126012852 9 + 1.620 1.594 -0.089
ENSG00000066651 E034 44.1381607 0.0005668483 6.629367e-01 7.711189e-01 6 126012970 126012974 5 + 1.610 1.634 0.084
ENSG00000066651 E035 98.1385251 0.0004245541 5.847992e-01 7.086334e-01 6 126012975 126013101 127 + 1.952 1.973 0.070
ENSG00000066651 E036 93.0704520 0.0003706553 8.995110e-01 9.398801e-01 6 126021160 126021265 106 + 1.936 1.930 -0.018
ENSG00000066651 E037 59.7609314 0.0004579606 6.465632e-01 7.584251e-01 6 126021266 126021280 15 + 1.736 1.758 0.075
ENSG00000066651 E038 115.1194155 0.0009254103 6.876945e-04 2.854237e-03 6 126038705 126038925 221 + 1.985 2.107 0.407
ENSG00000066651 E039 35.5296981 0.0006013550 1.077687e-19 6.624418e-18 6 126038926 126039276 351 + 1.288 1.820 1.822
ENSG00000066651 E040 3.7059506 0.0509620633 5.419457e-02 1.165896e-01 6 126040795 126040845 51 + 0.522 0.844 1.362
ENSG00000066651 E041 0.0000000       6 126042670 126042778 109 +      
ENSG00000066651 E042 0.0000000       6 126048201 126048265 65 +      
ENSG00000066651 E043 0.1472490 0.0439378833 1.000000e+00   6 126052587 126052643 57 + 0.077 0.000 -12.374
ENSG00000066651 E044 1.5615859 0.0466623854 1.432910e-01 2.525025e-01 6 126053123 126053190 68 + 0.294 0.570 1.485
ENSG00000066651 E045 0.6663248 0.0281224782 2.365882e-03 8.355409e-03 6 126054811 126054872 62 + 0.000 0.502 15.600
ENSG00000066651 E046 2.1744163 0.2120554701 7.340828e-01 8.251424e-01 6 126059619 126059799 181 + 0.468 0.502 0.169
ENSG00000066651 E047 0.1482932 0.0412320278 1.660345e-01   6 126072676 126072707 32 + 0.000 0.189 13.607
ENSG00000066651 E048 1.3296214 0.0222594505 4.094872e-02 9.278441e-02 6 126077238 126077368 131 + 0.438 0.000 -15.358
ENSG00000066651 E049 3.0163062 0.0524049820 9.555306e-01 9.760935e-01 6 126077369 126077529 161 + 0.569 0.574 0.020
ENSG00000066651 E050 1.9324608 0.0109079769 9.241753e-02 1.788927e-01 6 126112866 126112954 89 + 0.522 0.189 -2.090
ENSG00000066651 E051 1.4938222 0.3207029792 9.232781e-02 1.787573e-01 6 126114705 126114739 35 + 0.469 0.000 -14.889
ENSG00000066651 E052 1.3465732 0.2853323565 1.018244e-01 1.932781e-01 6 126115345 126115493 149 + 0.440 0.000 -14.798
ENSG00000066651 E053 1.9334930 0.1348904425 2.439574e-02 6.063314e-02 6 126115743 126115855 113 + 0.547 0.000 -15.514
ENSG00000066651 E054 2.4033647 0.0069960597 4.890705e-01 6.265753e-01 6 126174825 126174911 87 + 0.546 0.421 -0.620
ENSG00000066651 E055 0.1451727 0.0429485658 1.000000e+00   6 126177193 126177193 1 + 0.077 0.000 -12.377
ENSG00000066651 E056 0.7394793 0.0153787590 7.585389e-01 8.431090e-01 6 126177194 126177335 142 + 0.249 0.189 -0.505
ENSG00000066651 E057 0.7415557 0.1383526326 7.812461e-01 8.594633e-01 6 126198799 126198875 77 + 0.249 0.188 -0.515
ENSG00000066651 E058 0.8189741 0.0310027764 7.623258e-01 8.459237e-01 6 126199750 126199900 151 + 0.249 0.190 -0.501
ENSG00000066651 E059 1.4769946 0.0120766657 6.326719e-01 7.474807e-01 6 126202028 126203817 1790 + 0.335 0.422 0.498
ENSG00000066651 E060 1.4297652 0.0322136295 2.518492e-01 3.881461e-01 6 126247873 126247929 57 + 0.294 0.503 1.174