ENSG00000061938

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000333602 ENSG00000061938 HEK293_OSMI2_2hA HEK293_TMG_2hB TNK2 protein_coding protein_coding 12.23183 14.64596 8.297801 1.408804 0.8303483 -0.8189493 0.8185230 0.8179084 0.8740711 0.1979142 0.04317347 0.09469119 0.06737083 0.05456667 0.10760000 0.05303333 0.0784396631 8.459965e-07 FALSE TRUE
ENST00000671734 ENSG00000061938 HEK293_OSMI2_2hA HEK293_TMG_2hB TNK2 protein_coding protein_coding 12.23183 14.64596 8.297801 1.408804 0.8303483 -0.8189493 0.3327731 0.0000000 0.6036254 0.0000000 0.30206178 5.93928628 0.03560000 0.00000000 0.06613333 0.06613333 0.1023753800 8.459965e-07 FALSE FALSE
ENST00000672024 ENSG00000061938 HEK293_OSMI2_2hA HEK293_TMG_2hB TNK2 protein_coding protein_coding 12.23183 14.64596 8.297801 1.408804 0.8303483 -0.8189493 3.1555807 4.2411347 1.8557811 0.6094676 0.16358998 -1.18806827 0.25730417 0.28773333 0.23010000 -0.05763333 0.5221017121 8.459965e-07 FALSE TRUE
ENST00000673358 ENSG00000061938 HEK293_OSMI2_2hA HEK293_TMG_2hB TNK2 protein_coding retained_intron 12.23183 14.64596 8.297801 1.408804 0.8303483 -0.8189493 0.7859077 0.5464414 0.7905199 0.1267199 0.02870979 0.52470750 0.06640000 0.03636667 0.09666667 0.06030000 0.0009803388 8.459965e-07 TRUE TRUE
ENST00000673420 ENSG00000061938 HEK293_OSMI2_2hA HEK293_TMG_2hB TNK2 protein_coding protein_coding 12.23183 14.64596 8.297801 1.408804 0.8303483 -0.8189493 3.0602928 4.4176037 1.3770238 0.3108970 0.01926475 -1.67453356 0.23711667 0.30453333 0.17006667 -0.13446667 0.0094687370 8.459965e-07 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000061938 E001 1.4328831 0.0097935710 3.959322e-02 9.027884e-02 3 195863364 195863364 1 - 0.000 0.425 11.079
ENSG00000061938 E002 166.1990721 0.0031543491 1.747299e-04 8.557924e-04 3 195863365 195863732 368 - 2.032 2.197 0.555
ENSG00000061938 E003 62.7182876 0.0077043394 9.112204e-05 4.803093e-04 3 195863733 195863742 10 - 1.513 1.797 0.965
ENSG00000061938 E004 94.6468107 0.0009670775 5.723401e-07 5.007302e-06 3 195863743 195863790 48 - 1.724 1.965 0.810
ENSG00000061938 E005 233.2886110 0.0027202454 3.047170e-07 2.815299e-06 3 195863791 195864187 397 - 2.151 2.348 0.659
ENSG00000061938 E006 97.8849546 0.0037219036 8.622211e-04 3.481366e-03 3 195866889 195867016 128 - 1.783 1.967 0.620
ENSG00000061938 E007 34.0190579 0.0006285275 1.264743e-02 3.508078e-02 3 195867169 195867258 90 - 1.330 1.516 0.643
ENSG00000061938 E008 15.4176813 0.0011852130 8.142677e-02 1.617903e-01 3 195867259 195867264 6 - 1.007 1.192 0.666
ENSG00000061938 E009 182.2450545 0.0019828753 3.453480e-04 1.561310e-03 3 195867361 195868083 723 - 2.091 2.231 0.469
ENSG00000061938 E010 62.8326377 0.0005271487 2.603518e-03 9.075378e-03 3 195868084 195868212 129 - 1.610 1.777 0.566
ENSG00000061938 E011 32.7900467 0.0131796332 2.350647e-01 3.684284e-01 3 195868213 195868222 10 - 1.379 1.491 0.386
ENSG00000061938 E012 28.8911344 0.0026477841 2.052967e-01 3.327958e-01 3 195868223 195868224 2 - 1.330 1.435 0.364
ENSG00000061938 E013 48.2401837 0.0034375955 1.049007e-01 1.979494e-01 3 195868225 195868294 70 - 1.539 1.652 0.383
ENSG00000061938 E014 24.6569880 0.0007944748 4.102053e-01 5.538092e-01 3 195868295 195868297 3 - 1.287 1.359 0.251
ENSG00000061938 E015 31.9127100 0.0007251137 8.124399e-01 8.810408e-01 3 195868298 195868348 51 - 1.431 1.454 0.079
ENSG00000061938 E016 33.4636164 0.0020660430 3.649198e-01 5.092555e-01 3 195868349 195868488 140 - 1.513 1.458 -0.190
ENSG00000061938 E017 12.0694939 0.0018202937 6.776211e-03 2.064126e-02 3 195868489 195868505 17 - 1.238 0.979 -0.936
ENSG00000061938 E018 17.8664051 0.0010659832 4.011332e-02 9.124181e-02 3 195868506 195868532 27 - 1.330 1.162 -0.593
ENSG00000061938 E019 25.3374138 0.0009300838 2.039700e-01 3.311466e-01 3 195868533 195868587 55 - 1.414 1.326 -0.307
ENSG00000061938 E020 48.4035055 0.0004861942 6.280012e-01 7.436594e-01 3 195868588 195868709 122 - 1.599 1.634 0.117
ENSG00000061938 E021 3.0174786 0.0369769204 1.162010e-04 5.965135e-04 3 195868710 195869458 749 - 0.936 0.308 -2.886
ENSG00000061938 E022 0.2987644 0.0290785164 4.922306e-02   3 195869459 195869496 38 - 0.305 0.000 -14.326
ENSG00000061938 E023 3.2170601 0.0067749282 7.833741e-01 8.609605e-01 3 195869497 195869541 45 - 0.608 0.568 -0.179
ENSG00000061938 E024 5.5785654 0.0038367459 4.447641e-02 9.924759e-02 3 195869542 195870113 572 - 0.937 0.676 -1.030
ENSG00000061938 E025 49.1437866 0.0004926298 1.166536e-01 2.151826e-01 3 195870114 195870172 59 - 1.558 1.656 0.333
ENSG00000061938 E026 33.3441587 0.0129433507 5.026093e-01 6.386643e-01 3 195870173 195870205 33 - 1.423 1.488 0.223
ENSG00000061938 E027 3.0386547 0.0331330271 8.446455e-03 2.490127e-02 3 195870206 195870378 173 - 0.820 0.392 -1.936
ENSG00000061938 E028 0.0000000       3 195870379 195870404 26 -      
ENSG00000061938 E029 108.7488424 0.0005467001 5.414323e-01 6.724229e-01 3 195872276 195872470 195 - 1.986 1.969 -0.055
ENSG00000061938 E030 2.2476925 0.0072657144 1.888584e-01 3.123247e-01 3 195872471 195872806 336 - 0.608 0.390 -1.070
ENSG00000061938 E031 0.1515154 0.0420826624 1.935218e-01   3 195876444 195876457 14 - 0.179 0.000 -13.214
ENSG00000061938 E032 0.1515154 0.0420826624 1.935218e-01   3 195876458 195876508 51 - 0.179 0.000 -13.214
ENSG00000061938 E033 0.0000000       3 195876509 195876576 68 -      
ENSG00000061938 E034 0.0000000       3 195876577 195876603 27 -      
ENSG00000061938 E035 0.0000000       3 195876604 195876610 7 -      
ENSG00000061938 E036 0.5546650 0.0200338348 8.558083e-01 9.108291e-01 3 195876611 195876769 159 - 0.179 0.151 -0.292
ENSG00000061938 E037 85.4808668 0.0039705932 4.283686e-01 5.711511e-01 3 195878253 195878347 95 - 1.895 1.862 -0.109
ENSG00000061938 E038 55.7322326 0.0098898254 5.303171e-01 6.629514e-01 3 195878446 195878476 31 - 1.711 1.678 -0.112
ENSG00000061938 E039 93.5961873 0.0003150526 2.063075e-01 3.340889e-01 3 195878477 195878592 116 - 1.943 1.899 -0.148
ENSG00000061938 E040 56.1962695 0.0049623510 5.774735e-01 7.027224e-01 3 195879049 195879082 34 - 1.716 1.690 -0.085
ENSG00000061938 E041 52.3698230 0.0009829892 1.119586e-01 2.084297e-01 3 195879083 195879121 39 - 1.724 1.646 -0.266
ENSG00000061938 E042 68.8219563 0.0007361965 4.145948e-03 1.355184e-02 3 195879122 195879175 54 - 1.871 1.746 -0.424
ENSG00000061938 E043 13.3837847 0.0013073611 2.229070e-03 7.932872e-03 3 195879176 195879486 311 - 1.287 1.006 -1.004
ENSG00000061938 E044 106.0419013 0.0002687356 9.307567e-08 9.504426e-07 3 195882051 195882261 211 - 2.095 1.909 -0.623
ENSG00000061938 E045 46.1435434 0.0158427875 1.446200e-02 3.927299e-02 3 195882262 195882285 24 - 1.741 1.550 -0.649
ENSG00000061938 E046 60.4434727 0.0005040530 4.583246e-05 2.606530e-04 3 195882286 195882328 43 - 1.853 1.664 -0.640
ENSG00000061938 E047 1.3629428 0.0117249023 9.687116e-02 1.857109e-01 3 195882445 195882527 83 - 0.550 0.262 -1.619
ENSG00000061938 E048 93.0670886 0.0003140951 7.699925e-03 2.302592e-02 3 195883157 195883302 146 - 1.977 1.878 -0.332
ENSG00000061938 E049 31.1354672 0.0089767369 8.650404e-01 9.170434e-01 3 195883303 195883309 7 - 1.439 1.436 -0.011
ENSG00000061938 E050 8.5908657 0.0021959445 1.613111e-01 2.768007e-01 3 195883310 195884811 1502 - 1.029 0.872 -0.587
ENSG00000061938 E051 36.9992023 0.0132712966 8.453991e-01 9.038637e-01 3 195884812 195884829 18 - 1.513 1.510 -0.012
ENSG00000061938 E052 78.5979303 0.0019600691 2.036296e-02 5.225043e-02 3 195884830 195884974 145 - 1.906 1.804 -0.343
ENSG00000061938 E053 34.2088025 0.0007227792 5.418961e-02 1.165829e-01 3 195884975 195884982 8 - 1.570 1.454 -0.399
ENSG00000061938 E054 49.8338886 0.0004370320 5.298708e-02 1.144625e-01 3 195884983 195885033 51 - 1.711 1.614 -0.330
ENSG00000061938 E055 0.9974562 0.0131404883 2.778015e-01 4.174195e-01 3 195885034 195885412 379 - 0.403 0.210 -1.294
ENSG00000061938 E056 5.6344269 0.1327685633 2.410388e-01 3.753943e-01 3 195885413 195885543 131 - 0.912 0.690 -0.878
ENSG00000061938 E057 1.4456572 0.0111507428 8.183375e-01 8.851917e-01 3 195885544 195886273 730 - 0.305 0.352 0.292
ENSG00000061938 E058 56.1592145 0.0004413605 7.345995e-02 1.490624e-01 3 195886977 195887047 71 - 1.752 1.668 -0.287
ENSG00000061938 E059 75.3275932 0.0009291771 5.613123e-01 6.891680e-01 3 195888426 195888606 181 - 1.834 1.815 -0.066
ENSG00000061938 E060 2.0992991 0.0073944119 1.872588e-01 3.102868e-01 3 195891912 195892007 96 - 0.608 0.390 -1.072
ENSG00000061938 E061 4.3638563 0.0047822588 8.705261e-02 1.706737e-01 3 195892411 195892784 374 - 0.852 0.614 -0.974
ENSG00000061938 E062 2.6057907 0.2533621411 3.473398e-01 4.915475e-01 3 195894316 195894363 48 - 0.659 0.437 -1.039
ENSG00000061938 E063 3.0957257 0.0056892726 4.152489e-03 1.357064e-02 3 195894606 195894730 125 - 0.852 0.425 -1.880
ENSG00000061938 E064 3.1471053 0.0052660270 8.931331e-02 1.740880e-01 3 195895246 195895561 316 - 0.747 0.488 -1.142
ENSG00000061938 E065 1.3640716 0.0131123661 5.939962e-02 1.256092e-01 3 195895895 195895961 67 - 0.000 0.391 13.536
ENSG00000061938 E066 4.2272665 0.2206726556 8.156601e-02 1.620041e-01 3 195896053 195896297 245 - 0.938 0.502 -1.820
ENSG00000061938 E067 2.2550689 0.0066625101 6.462254e-03 1.982534e-02 3 195896743 195896783 41 - 0.747 0.309 -2.142
ENSG00000061938 E068 4.0159604 0.0042890275 2.885044e-01 4.291076e-01 3 195897167 195897270 104 - 0.747 0.593 -0.655
ENSG00000061938 E069 59.9259648 0.0004643840 2.602597e-01 3.977398e-01 3 195908485 195908859 375 - 1.756 1.707 -0.168
ENSG00000061938 E070 10.7675541 0.0073056725 3.555662e-01 4.999342e-01 3 195908860 195908949 90 - 1.068 0.971 -0.356
ENSG00000061938 E071 23.4242491 0.0147404452 1.100482e-04 5.681976e-04 3 195908950 195909802 853 - 1.546 1.204 -1.186
ENSG00000061938 E072 0.0000000       3 195911794 195911945 152 -