ENSG00000053747

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000313654 ENSG00000053747 HEK293_OSMI2_2hA HEK293_TMG_2hB LAMA3 protein_coding protein_coding 2.496524 3.18101 1.825601 0.3520141 0.3224395 -0.7977604 0.73076423 0.177869067 0.83517389 0.177869067 0.02247690 2.169521 0.35701667 0.054366667 0.48633333 0.43196667 3.229765e-02 5.525335e-05 FALSE TRUE
ENST00000399516 ENSG00000053747 HEK293_OSMI2_2hA HEK293_TMG_2hB LAMA3 protein_coding protein_coding 2.496524 3.18101 1.825601 0.3520141 0.3224395 -0.7977604 0.13393424 0.461865543 0.00000000 0.090892996 0.00000000 -5.560304 0.05762917 0.151133333 0.00000000 -0.15113333 5.525335e-05 5.525335e-05 FALSE TRUE
ENST00000585600 ENSG00000053747 HEK293_OSMI2_2hA HEK293_TMG_2hB LAMA3 protein_coding non_stop_decay 2.496524 3.18101 1.825601 0.3520141 0.3224395 -0.7977604 0.71927233 1.346918693 0.47468337 0.203384485 0.17376337 -1.485220 0.26276250 0.435166667 0.23970000 -0.19546667 2.827676e-01 5.525335e-05 FALSE TRUE
ENST00000586751 ENSG00000053747 HEK293_OSMI2_2hA HEK293_TMG_2hB LAMA3 protein_coding protein_coding 2.496524 3.18101 1.825601 0.3520141 0.3224395 -0.7977604 0.07592972 0.008954042 0.18787973 0.008954042 0.09398591 3.384046 0.04495833 0.003533333 0.08946667 0.08593333 9.091129e-02 5.525335e-05 FALSE TRUE
ENST00000588770 ENSG00000053747 HEK293_OSMI2_2hA HEK293_TMG_2hB LAMA3 protein_coding processed_transcript 2.496524 3.18101 1.825601 0.3520141 0.3224395 -0.7977604 0.51160427 0.884861397 0.05497582 0.218528706 0.05497582 -3.783689 0.15482083 0.272066667 0.04476667 -0.22730000 5.937166e-02 5.525335e-05 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000053747 E001 1.1707547 0.276351548 7.549938e-01 8.404722e-01 18 23689453 23689597 145 + 0.339 0.319 -0.130
ENSG00000053747 E002 2.2228167 0.006692051 1.920938e-02 4.979079e-02 18 23689598 23689683 86 + 0.695 0.317 -1.880
ENSG00000053747 E003 11.6364840 0.002017909 4.416508e-02 9.869354e-02 18 23689684 23689977 294 + 1.193 1.005 -0.680
ENSG00000053747 E004 13.2449668 0.001338637 7.584185e-01 8.430249e-01 18 23713920 23714072 153 + 1.147 1.125 -0.079
ENSG00000053747 E005 12.1709327 0.004770315 3.307400e-01 4.743191e-01 18 23747943 23748060 118 + 1.036 1.142 0.381
ENSG00000053747 E006 16.5917942 0.011272566 5.269931e-01 6.601640e-01 18 23749428 23749546 119 + 1.182 1.253 0.250
ENSG00000053747 E007 23.9933684 0.026961492 7.014166e-01 8.006033e-01 18 23750918 23751088 171 + 1.341 1.399 0.203
ENSG00000053747 E008 17.5492570 0.017645342 8.439295e-01 9.028325e-01 18 23753721 23753812 92 + 1.235 1.260 0.087
ENSG00000053747 E009 15.5042534 0.027125410 4.665571e-02 1.032158e-01 18 23758396 23758511 116 + 1.036 1.272 0.842
ENSG00000053747 E010 14.8063943 0.068018327 2.159891e-01 3.455808e-01 18 23763405 23763523 119 + 1.067 1.240 0.620
ENSG00000053747 E011 13.5425933 0.061689548 1.765299e-01 2.967362e-01 18 23773497 23773587 91 + 1.004 1.217 0.770
ENSG00000053747 E012 11.4964873 0.117679624 2.079326e-01 3.360107e-01 18 23775792 23775923 132 + 0.909 1.156 0.905
ENSG00000053747 E013 9.2594940 0.077108173 3.001040e-01 4.417458e-01 18 23777557 23777619 63 + 0.864 1.063 0.740
ENSG00000053747 E014 11.1099328 0.108339849 7.814849e-01 8.595962e-01 18 23784023 23784157 135 + 1.097 1.058 -0.141
ENSG00000053747 E015 4.0575396 0.296824554 2.509252e-01 3.870396e-01 18 23796023 23796148 126 + 0.475 0.786 1.363
ENSG00000053747 E016 5.7311803 0.047249774 2.140541e-01 3.433257e-01 18 23810366 23810503 138 + 0.930 0.742 -0.734
ENSG00000053747 E017 2.7439713 0.009702383 7.159699e-03 2.163788e-02 18 23813057 23813103 47 + 0.788 0.369 -1.939
ENSG00000053747 E018 5.4345412 0.003002691 4.564281e-02 1.013781e-01 18 23814403 23814502 100 + 0.930 0.677 -0.998
ENSG00000053747 E019 4.6728245 0.003597419 2.947749e-01 4.358811e-01 18 23815188 23815240 53 + 0.815 0.677 -0.557
ENSG00000053747 E020 5.9562711 0.003600909 3.939084e-01 5.378096e-01 18 23815468 23815573 106 + 0.887 0.785 -0.397
ENSG00000053747 E021 5.0256518 0.055309732 2.813329e-01 4.212289e-01 18 23816388 23816487 100 + 0.864 0.701 -0.648
ENSG00000053747 E022 7.9212272 0.002327095 7.676118e-04 3.142012e-03 18 23819841 23819997 157 + 1.135 0.765 -1.388
ENSG00000053747 E023 6.8560022 0.002497596 4.891371e-03 1.562789e-02 18 23822252 23822375 124 + 1.052 0.724 -1.258
ENSG00000053747 E024 8.7609114 0.002032269 5.002734e-03 1.593719e-02 18 23824423 23824565 143 + 1.135 0.839 -1.098
ENSG00000053747 E025 7.0749797 0.010541233 2.135541e-01 3.427181e-01 18 23826702 23826799 98 + 0.986 0.838 -0.561
ENSG00000053747 E026 7.8575580 0.100851719 6.962600e-01 7.966694e-01 18 23827314 23827403 90 + 0.970 0.905 -0.242
ENSG00000053747 E027 4.8274997 0.203553234 5.312324e-01 6.637235e-01 18 23827404 23827467 64 + 0.816 0.706 -0.445
ENSG00000053747 E028 5.3682185 0.023870250 7.808905e-01 8.592322e-01 18 23833828 23833952 125 + 0.759 0.804 0.181
ENSG00000053747 E029 2.2872324 0.097718539 9.261411e-01 9.574972e-01 18 23833953 23833988 36 + 0.528 0.496 -0.151
ENSG00000053747 E030 0.2987644 0.027442404 1.124263e-01   18 23834284 23834837 554 + 0.253 0.000 -13.594
ENSG00000053747 E031 4.9959026 0.006376121 7.572280e-02 1.526600e-01 18 23836981 23837089 109 + 0.887 0.652 -0.943
ENSG00000053747 E032 0.9567573 0.280691681 9.140319e-01 9.495536e-01 18 23837090 23837312 223 + 0.252 0.266 0.101
ENSG00000053747 E033 2.8600864 0.006271519 1.340666e-03 5.112218e-03 18 23838781 23838795 15 + 0.815 0.317 -2.365
ENSG00000053747 E034 5.7547274 0.086803942 9.384189e-03 2.724274e-02 18 23838796 23838878 83 + 1.038 0.575 -1.845
ENSG00000053747 E035 8.4828903 0.015650140 4.167724e-04 1.838715e-03 18 23839785 23839929 145 + 1.171 0.747 -1.593
ENSG00000053747 E036 6.1207536 0.002762984 3.362223e-05 1.975202e-04 18 23842395 23842521 127 + 1.081 0.566 -2.042
ENSG00000053747 E037 6.3856223 0.106593640 1.634361e-01 2.796267e-01 18 23842611 23842750 140 + 0.985 0.737 -0.959
ENSG00000053747 E038 6.2938329 0.002746568 1.228465e-01 2.240235e-01 18 23845009 23845124 116 + 0.949 0.766 -0.709
ENSG00000053747 E039 7.0697687 0.028403514 3.688369e-01 5.132561e-01 18 23846297 23846508 212 + 0.968 0.853 -0.435
ENSG00000053747 E040 8.1853411 0.062788388 5.519998e-01 6.813794e-01 18 23847464 23847668 205 + 1.003 0.923 -0.298
ENSG00000053747 E041 9.1964993 0.037760090 8.419102e-01 9.014307e-01 18 23857844 23857988 145 + 1.004 0.991 -0.048
ENSG00000053747 E042 10.7383378 0.001688227 9.523270e-01 9.741513e-01 18 23858689 23858829 141 + 1.036 1.049 0.047
ENSG00000053747 E043 8.9927619 0.012083743 1.149383e-01 2.127497e-01 18 23861646 23861807 162 + 1.081 0.903 -0.659
ENSG00000053747 E044 7.8008021 0.043335174 1.860630e-01 3.088177e-01 18 23864785 23864883 99 + 1.036 0.843 -0.726
ENSG00000053747 E045 5.8655905 0.020192897 9.887753e-02 1.887588e-01 18 23867834 23867917 84 + 0.949 0.724 -0.878
ENSG00000053747 E046 6.4966418 0.002669652 1.633376e-01 2.795236e-01 18 23871431 23871661 231 + 0.949 0.785 -0.631
ENSG00000053747 E047 0.0000000       18 23873020 23873044 25 +      
ENSG00000053747 E048 0.0000000       18 23873045 23873215 171 +      
ENSG00000053747 E049 6.1250531 0.032635750 3.024654e-01 4.443328e-01 18 23876294 23876407 114 + 0.909 0.770 -0.542
ENSG00000053747 E050 6.0801169 0.135437876 2.632847e-01 4.011623e-01 18 23881936 23882045 110 + 0.968 0.729 -0.927
ENSG00000053747 E051 5.1106490 0.075061440 3.345182e-02 7.868097e-02 18 23884773 23884853 81 + 0.968 0.599 -1.480
ENSG00000053747 E052 5.1962684 0.003252126 3.541662e-01 4.984304e-01 18 23890011 23890117 107 + 0.840 0.724 -0.464
ENSG00000053747 E053 3.0957217 0.005085843 5.598624e-01 6.879471e-01 18 23894298 23894348 51 + 0.528 0.625 0.443
ENSG00000053747 E054 7.3498823 0.002556407 3.770576e-01 5.213855e-01 18 23894907 23895058 152 + 0.968 0.871 -0.366
ENSG00000053747 E055 0.2903454 0.426588447 1.926109e-01   18 23898261 23898451 191 + 0.252 0.000 -12.968
ENSG00000053747 E056 0.0000000       18 23898737 23898737 1 +      
ENSG00000053747 E057 7.8282879 0.003876027 2.839222e-01 4.241170e-01 18 23898738 23898848 111 + 1.004 0.887 -0.439
ENSG00000053747 E058 8.5377897 0.015754392 3.739824e-01 5.184084e-01 18 23898954 23899065 112 + 1.021 0.917 -0.385
ENSG00000053747 E059 10.5168817 0.002636147 2.958906e-01 4.370363e-01 18 23899288 23899455 168 + 1.095 0.994 -0.370
ENSG00000053747 E060 0.1482932 0.042605047 7.004555e-01   18 23899456 23899700 245 + 0.000 0.103 10.866
ENSG00000053747 E061 10.1005287 0.046051906 9.201387e-01 9.535552e-01 18 23901127 23901323 197 + 1.003 1.041 0.137
ENSG00000053747 E062 8.4942218 0.002878363 2.512728e-01 3.874721e-01 18 23903009 23903125 117 + 1.036 0.916 -0.447
ENSG00000053747 E063 8.8619475 0.017185879 7.740327e-02 1.552964e-01 18 23903933 23904087 155 + 1.095 0.888 -0.766
ENSG00000053747 E064 7.1180263 0.002347214 9.569154e-01 9.769656e-01 18 23904553 23904694 142 + 0.887 0.887 -0.001
ENSG00000053747 E065 8.2358176 0.015754281 4.454865e-01 5.870215e-01 18 23905522 23905624 103 + 1.004 0.916 -0.328
ENSG00000053747 E066 10.4666338 0.001729918 1.463968e-01 2.567789e-01 18 23907550 23907666 117 + 1.122 0.982 -0.512
ENSG00000053747 E067 14.8863217 0.009701825 4.641659e-01 6.039267e-01 18 23907756 23907935 180 + 1.215 1.153 -0.219
ENSG00000053747 E068 13.8271250 0.001671437 9.728304e-01 9.870343e-01 18 23909153 23909295 143 + 1.147 1.151 0.013
ENSG00000053747 E069 13.7086002 0.036437501 5.320325e-01 6.644075e-01 18 23912711 23912881 171 + 1.067 1.171 0.376
ENSG00000053747 E070 11.8975118 0.008251330 9.546381e-01 9.755659e-01 18 23914410 23914561 152 + 1.067 1.082 0.056
ENSG00000053747 E071 12.0323673 0.001685843 9.163427e-01 9.511209e-01 18 23914698 23914860 163 + 1.081 1.098 0.061
ENSG00000053747 E072 12.8825109 0.002253825 3.030881e-01 4.449938e-01 18 23915289 23915422 134 + 1.052 1.159 0.385
ENSG00000053747 E073 13.1071915 0.010110627 4.114467e-01 5.550066e-01 18 23916551 23916695 145 + 1.067 1.160 0.333
ENSG00000053747 E074 12.2625525 0.002084667 4.212380e-02 9.494845e-02 18 23920935 23921054 120 + 1.204 1.017 -0.675
ENSG00000053747 E075 16.9758462 0.001110427 1.059713e-01 1.995794e-01 18 23921452 23921585 134 + 1.309 1.182 -0.444
ENSG00000053747 E076 17.2397423 0.014748338 9.993536e-01 1.000000e+00 18 23928123 23928240 118 + 1.225 1.238 0.045
ENSG00000053747 E077 22.0208374 0.030783242 7.754253e-01 8.553298e-01 18 23928625 23928765 141 + 1.291 1.355 0.220
ENSG00000053747 E078 17.2171528 0.017231792 8.483548e-01 9.058225e-01 18 23931062 23931154 93 + 1.204 1.241 0.129
ENSG00000053747 E079 11.1997493 0.001815324 5.026618e-01 6.387002e-01 18 23931155 23931201 47 + 1.004 1.080 0.278
ENSG00000053747 E080 0.1451727 0.044372765 3.321507e-01   18 23931202 23931419 218 + 0.145 0.000 -12.628
ENSG00000053747 E081 0.4407149 0.021720204 3.589370e-01 5.032831e-01 18 23931420 23931691 272 + 0.253 0.103 -1.560
ENSG00000053747 E082 15.0063808 0.001382308 1.542761e-01 2.674734e-01 18 23932160 23932291 132 + 1.081 1.219 0.494
ENSG00000053747 E083 0.1472490 0.042319458 3.330654e-01   18 23932292 23932585 294 + 0.145 0.000 -12.632
ENSG00000053747 E084 17.8640293 0.034387693 1.156874e-01 2.138020e-01 18 23933782 23933935 154 + 1.108 1.315 0.733
ENSG00000053747 E085 22.0433659 0.008739112 7.321569e-01 8.236781e-01 18 23939223 23939386 164 + 1.308 1.349 0.143
ENSG00000053747 E086 21.1066880 0.028870508 5.029602e-01 6.389501e-01 18 23943788 23943971 184 + 1.245 1.349 0.365
ENSG00000053747 E087 10.2680687 0.017107214 1.611361e-01 2.765890e-01 18 23946144 23946183 40 + 0.887 1.075 0.698
ENSG00000053747 E088 17.2168795 0.007595119 2.357602e-04 1.115681e-03 18 23946184 23946284 101 + 0.949 1.333 1.378
ENSG00000053747 E089 0.5944058 0.234509366 8.663340e-01 9.179421e-01 18 23946477 23946837 361 + 0.145 0.191 0.483
ENSG00000053747 E090 17.4060474 0.013113106 3.537481e-03 1.183306e-02 18 23949765 23949892 128 + 1.004 1.324 1.146
ENSG00000053747 E091 9.1506959 0.032268804 2.480768e-02 6.147873e-02 18 23949893 23949924 32 + 0.728 1.068 1.297
ENSG00000053747 E092 21.9585885 0.012522232 5.687377e-03 1.778433e-02 18 23950029 23950159 131 + 1.135 1.414 0.983
ENSG00000053747 E093 19.2247569 0.015370501 1.048754e-02 2.994957e-02 18 23951684 23951777 94 + 1.095 1.367 0.961
ENSG00000053747 E094 22.5000049 0.010822393 2.515745e-03 8.811572e-03 18 23952990 23953109 120 + 1.147 1.436 1.014
ENSG00000053747 E095 38.7610110 0.004105549 1.358869e-06 1.096675e-05 18 23954503 23956222 1720 + 1.333 1.674 1.170