ENSG00000049618

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000350026 ENSG00000049618 HEK293_OSMI2_2hA HEK293_TMG_2hB ARID1B protein_coding protein_coding 13.55317 12.0314 16.24875 0.7355439 1.513349 0.4332131 0.4104565 0.8420917 0.1516470 0.2257134 0.1516470 -2.3981619 0.03109167 0.06856667 0.01023333 -0.05833333 9.504681e-02 5.681029e-23 FALSE TRUE
ENST00000478761 ENSG00000049618 HEK293_OSMI2_2hA HEK293_TMG_2hB ARID1B protein_coding retained_intron 13.55317 12.0314 16.24875 0.7355439 1.513349 0.4332131 0.7425606 0.0000000 1.9388893 0.0000000 1.3830177 7.6065083 0.04373333 0.00000000 0.10713333 0.10713333 2.243047e-01 5.681029e-23 FALSE FALSE
ENST00000636254 ENSG00000049618 HEK293_OSMI2_2hA HEK293_TMG_2hB ARID1B protein_coding retained_intron 13.55317 12.0314 16.24875 0.7355439 1.513349 0.4332131 0.6140806 1.7470484 0.0000000 0.8974418 0.0000000 -7.4570101 0.05206667 0.14520000 0.00000000 -0.14520000 1.304710e-01 5.681029e-23 FALSE TRUE
ENST00000636930 ENSG00000049618 HEK293_OSMI2_2hA HEK293_TMG_2hB ARID1B protein_coding protein_coding 13.55317 12.0314 16.24875 0.7355439 1.513349 0.4332131 0.6357672 0.0000000 1.4434826 0.0000000 0.1655695 7.1833700 0.04534167 0.00000000 0.09203333 0.09203333 3.731929e-11 5.681029e-23 FALSE TRUE
ENST00000637741 ENSG00000049618 HEK293_OSMI2_2hA HEK293_TMG_2hB ARID1B protein_coding processed_transcript 13.55317 12.0314 16.24875 0.7355439 1.513349 0.4332131 1.9823613 3.2670504 2.1541843 0.1897348 0.1332378 -0.5985745 0.15172083 0.27176667 0.13523333 -0.13653333 2.355388e-04 5.681029e-23 FALSE TRUE
ENST00000637810 ENSG00000049618 HEK293_OSMI2_2hA HEK293_TMG_2hB ARID1B protein_coding protein_coding 13.55317 12.0314 16.24875 0.7355439 1.513349 0.4332131 1.4150802 0.5903201 0.0000000 0.3849279 0.0000000 -5.9076600 0.10929583 0.05040000 0.00000000 -0.05040000 1.303908e-01 5.681029e-23 FALSE TRUE
MSTRG.29225.10 ENSG00000049618 HEK293_OSMI2_2hA HEK293_TMG_2hB ARID1B protein_coding   13.55317 12.0314 16.24875 0.7355439 1.513349 0.4332131 0.6671959 2.4525884 0.0000000 0.3795000 0.0000000 -7.9440317 0.05790000 0.20426667 0.00000000 -0.20426667 5.681029e-23 5.681029e-23 FALSE TRUE
MSTRG.29225.12 ENSG00000049618 HEK293_OSMI2_2hA HEK293_TMG_2hB ARID1B protein_coding   13.55317 12.0314 16.24875 0.7355439 1.513349 0.4332131 0.7346830 0.4339531 0.6826418 0.2246623 0.4086613 0.6417020 0.05564583 0.03453333 0.04643333 0.01190000 1.000000e+00 5.681029e-23 FALSE TRUE
MSTRG.29225.14 ENSG00000049618 HEK293_OSMI2_2hA HEK293_TMG_2hB ARID1B protein_coding   13.55317 12.0314 16.24875 0.7355439 1.513349 0.4332131 0.4158481 0.0000000 0.9115979 0.0000000 0.1849340 6.5260656 0.02881667 0.00000000 0.05873333 0.05873333 3.989045e-07 5.681029e-23 FALSE TRUE
MSTRG.29225.9 ENSG00000049618 HEK293_OSMI2_2hA HEK293_TMG_2hB ARID1B protein_coding   13.55317 12.0314 16.24875 0.7355439 1.513349 0.4332131 2.8617154 0.7167337 6.0071951 0.4574116 0.3204354 3.0495925 0.19427500 0.05543333 0.37223333 0.31680000 8.112801e-02 5.681029e-23 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000049618 E001 0.1451727 0.0433443565 5.684412e-01   6 156776020 156776126 107 + 0.108 0.000 -9.753
ENSG00000049618 E002 1.6220656 0.0085794942 7.923739e-01 8.672632e-01 6 156776862 156777377 516 + 0.382 0.459 0.413
ENSG00000049618 E003 9.8470012 0.0240972607 1.275839e-05 8.270452e-05 6 156777378 156777929 552 + 1.218 0.676 -2.053
ENSG00000049618 E004 3.4406886 0.0046892205 7.891979e-02 1.577904e-01 6 156777930 156777940 11 + 0.741 0.512 -1.002
ENSG00000049618 E005 31.8198421 0.0171437306 1.011288e-01 1.921967e-01 6 156777941 156778973 1033 + 1.553 1.459 -0.321
ENSG00000049618 E006 31.6291423 0.0222360399 5.942125e-04 2.512236e-03 6 156778974 156779399 426 + 1.619 1.347 -0.934
ENSG00000049618 E007 14.7464222 0.0414572059 1.157658e-01 2.139040e-01 6 156779400 156779417 18 + 1.260 1.107 -0.543
ENSG00000049618 E008 17.4249311 0.0280780573 2.408006e-02 5.997679e-02 6 156779418 156779432 15 + 1.345 1.143 -0.711
ENSG00000049618 E009 27.4927857 0.0537634502 8.980687e-02 1.748270e-01 6 156779433 156779463 31 + 1.513 1.369 -0.496
ENSG00000049618 E010 25.7875627 0.0393334144 1.017165e-01 1.931112e-01 6 156779464 156779471 8 + 1.478 1.352 -0.435
ENSG00000049618 E011 57.9051254 0.0144883344 2.062520e-02 5.279675e-02 6 156829227 156829372 146 + 1.817 1.701 -0.392
ENSG00000049618 E012 41.3687362 0.0217862006 5.618028e-02 1.200165e-01 6 156829373 156829409 37 + 1.672 1.559 -0.384
ENSG00000049618 E013 31.5434749 0.0200397090 4.454370e-01 5.869849e-01 6 156829410 156829421 12 + 1.513 1.499 -0.051
ENSG00000049618 E014 0.4417591 0.1667437244 5.229998e-01 6.567504e-01 6 156829422 156829730 309 + 0.108 0.240 1.389
ENSG00000049618 E015 0.0000000       6 156870099 156870119 21 +      
ENSG00000049618 E016 0.6997360 0.0167942051 2.472925e-02 6.132046e-02 6 156870120 156870527 408 + 0.000 0.398 13.921
ENSG00000049618 E017 1.8250794 0.1534219403 2.309123e-02 5.793741e-02 6 156871614 156871652 39 + 0.614 0.139 -3.048
ENSG00000049618 E018 66.1773888 0.0004212125 6.830142e-04 2.836738e-03 6 156901376 156901525 150 + 1.866 1.767 -0.334
ENSG00000049618 E019 1.0695761 0.0116812284 3.079476e-01 4.501802e-01 6 156901526 156902150 625 + 0.194 0.399 1.415
ENSG00000049618 E020 24.6013662 0.0008643917 8.165611e-03 2.420211e-02 6 156935466 156935470 5 + 1.465 1.328 -0.475
ENSG00000049618 E021 53.9787515 0.0038044696 4.128047e-05 2.371921e-04 6 156935471 156935544 74 + 1.811 1.629 -0.617
ENSG00000049618 E022 43.3162184 0.0101190785 1.470616e-05 9.402760e-05 6 156935545 156935576 32 + 1.748 1.480 -0.911
ENSG00000049618 E023 1.5154904 0.0122572092 3.167497e-01 4.595488e-01 6 156935577 156936501 925 + 0.473 0.327 -0.811
ENSG00000049618 E024 7.1929825 0.0828136447 5.878098e-01 7.110717e-01 6 156936502 156943901 7400 + 0.840 1.003 0.615
ENSG00000049618 E025 1.6315157 0.0341849153 3.995925e-01 5.433298e-01 6 156984708 156985644 937 + 0.328 0.511 0.994
ENSG00000049618 E026 0.6966155 0.0172671820 2.401813e-01 3.743419e-01 6 157022286 157022497 212 + 0.108 0.328 1.999
ENSG00000049618 E027 0.1817044 0.0398865711 4.165612e-01   6 157022498 157022578 81 + 0.000 0.139 11.703
ENSG00000049618 E028 0.1817044 0.0398865711 4.165612e-01   6 157022579 157024752 2174 + 0.000 0.139 11.703
ENSG00000049618 E029 0.0000000       6 157030306 157030374 69 +      
ENSG00000049618 E030 0.1472490 0.0428540840 5.685535e-01   6 157036315 157036521 207 + 0.108 0.000 -12.071
ENSG00000049618 E031 20.9430448 0.0408101181 1.198962e-01 2.198261e-01 6 157036835 157036876 42 + 1.397 1.254 -0.497
ENSG00000049618 E032 2.5829770 0.0114635786 8.744185e-01 9.232756e-01 6 157050914 157051912 999 + 0.549 0.560 0.051
ENSG00000049618 E033 3.7913101 0.0041480145 6.892282e-01 7.911406e-01 6 157071182 157072575 1394 + 0.694 0.677 -0.073
ENSG00000049618 E034 58.1469655 0.0171095563 4.641282e-04 2.022582e-03 6 157084662 157084765 104 + 1.862 1.635 -0.766
ENSG00000049618 E035 34.3777186 0.0042404463 8.522750e-04 3.445823e-03 6 157084766 157084771 6 + 1.619 1.443 -0.602
ENSG00000049618 E036 73.7139215 0.0004599320 1.373278e-07 1.358839e-06 6 157084772 157084905 134 + 1.942 1.770 -0.581
ENSG00000049618 E037 58.4901814 0.0071016544 1.334689e-04 6.743462e-04 6 157110472 157110561 90 + 1.849 1.666 -0.619
ENSG00000049618 E038 0.5181333 0.0208505372 6.697593e-01 7.764234e-01 6 157110562 157111305 744 + 0.194 0.139 -0.585
ENSG00000049618 E039 77.0758454 0.0019715912 2.610149e-06 1.981030e-05 6 157133028 157133207 180 + 1.960 1.797 -0.548
ENSG00000049618 E040 0.7738329 0.0680059332 1.401455e-01 2.482181e-01 6 157140613 157141277 665 + 0.108 0.396 2.399
ENSG00000049618 E041 57.4380491 0.0059908853 8.306940e-01 8.937962e-01 6 157148624 157148728 105 + 1.746 1.783 0.126
ENSG00000049618 E042 51.4147919 0.0142086787 5.960292e-01 7.180253e-01 6 157148729 157148819 91 + 1.711 1.722 0.037
ENSG00000049618 E043 42.4925532 0.0008353326 5.913182e-01 7.141074e-01 6 157148820 157148907 88 + 1.625 1.646 0.070
ENSG00000049618 E044 25.9714724 0.0016636471 5.651059e-01 6.922575e-01 6 157148908 157148910 3 + 1.421 1.430 0.032
ENSG00000049618 E045 33.1709717 0.0128566222 9.035407e-01 9.426297e-01 6 157148911 157148951 41 + 1.509 1.550 0.138
ENSG00000049618 E046 0.6234634 0.0201158745 2.421170e-01 3.766957e-01 6 157148952 157148981 30 + 0.108 0.327 1.995
ENSG00000049618 E047 1.3284849 0.0682340803 1.259589e-01 2.285179e-01 6 157148982 157150724 1743 + 0.194 0.511 1.991
ENSG00000049618 E048 8.1753180 0.0122154904 2.142815e-01 3.435857e-01 6 157150725 157150853 129 + 1.013 0.909 -0.388
ENSG00000049618 E049 0.0000000       6 157150854 157152404 1551 +      
ENSG00000049618 E050 0.2214452 0.0387480255 4.157248e-01   6 157154055 157154309 255 + 0.000 0.139 11.716
ENSG00000049618 E051 0.0000000       6 157164639 157164748 110 +      
ENSG00000049618 E052 0.0000000       6 157166015 157167039 1025 +      
ENSG00000049618 E053 66.7365080 0.0028254362 4.385822e-02 9.812471e-02 6 157167040 157167185 146 + 1.851 1.802 -0.164
ENSG00000049618 E054 13.1965101 0.0020553254 4.718911e-05 2.675081e-04 6 157167186 157170049 2864 + 1.280 0.930 -1.264
ENSG00000049618 E055 0.2944980 0.3321003092 3.374513e-01   6 157170050 157170109 60 + 0.194 0.000 -12.189
ENSG00000049618 E056 0.4502799 0.0340448572 1.147698e-01 2.124959e-01 6 157170110 157170249 140 + 0.266 0.000 -13.719
ENSG00000049618 E057 4.2697687 0.0037755353 4.579796e-04 1.998500e-03 6 157172776 157173500 725 + 0.890 0.398 -2.171
ENSG00000049618 E058 2.8638854 0.0105766903 2.979381e-01 4.393207e-01 6 157173501 157173984 484 + 0.642 0.513 -0.585
ENSG00000049618 E059 1.1792598 0.1044301678 8.272561e-02 1.638195e-01 6 157173985 157174007 23 + 0.108 0.465 2.766
ENSG00000049618 E060 34.3003545 0.0010831455 6.232639e-03 1.922466e-02 6 157174008 157174025 18 + 1.598 1.481 -0.399
ENSG00000049618 E061 62.1687942 0.0046513603 3.276343e-03 1.108104e-02 6 157174026 157174117 92 + 1.849 1.738 -0.374
ENSG00000049618 E062 0.9212829 0.0183751813 5.286580e-01 6.615672e-01 6 157174118 157174331 214 + 0.194 0.328 1.002
ENSG00000049618 E063 48.6046789 0.0032105822 1.544466e-03 5.779643e-03 6 157174847 157175005 159 + 1.752 1.623 -0.440
ENSG00000049618 E064 0.4720498 0.2089415578 7.208316e-01 8.153652e-01 6 157175006 157175840 835 + 0.194 0.139 -0.580
ENSG00000049618 E065 99.4040524 0.0003409275 1.149960e-05 7.536461e-05 6 157180969 157181178 210 + 2.049 1.941 -0.359
ENSG00000049618 E066 92.6921354 0.0006040555 6.410461e-01 7.541516e-01 6 157184231 157184435 205 + 1.956 1.989 0.111
ENSG00000049618 E067 6.8292157 0.0044786152 4.743028e-03 1.521423e-02 6 157184436 157186354 1919 + 0.669 1.061 1.520
ENSG00000049618 E068 2.0939990 0.0072438620 4.200055e-02 9.472700e-02 6 157186355 157186620 266 + 0.266 0.642 1.999
ENSG00000049618 E069 80.9365820 0.0017054259 1.789704e-02 4.691685e-02 6 157189642 157189780 139 + 1.935 1.884 -0.173
ENSG00000049618 E070 40.3705834 0.0007068230 6.875669e-04 2.853833e-03 6 157190038 157190040 3 + 1.677 1.537 -0.477
ENSG00000049618 E071 111.6728281 0.0002817547 3.959177e-02 9.027741e-02 6 157190041 157190210 170 + 2.058 2.040 -0.062
ENSG00000049618 E072 2.8701159 0.0054888948 8.547786e-02 1.681728e-01 6 157193471 157196164 2694 + 0.694 0.459 -1.073
ENSG00000049618 E073 104.6199713 0.0008713917 2.025038e-02 5.200733e-02 6 157196165 157196315 151 + 2.039 2.004 -0.116
ENSG00000049618 E074 0.1515154 0.0437495814 5.677796e-01   6 157198509 157198810 302 + 0.108 0.000 -12.063
ENSG00000049618 E075 70.8223440 0.0003946564 5.381400e-05 3.008055e-04 6 157198811 157198907 97 + 1.907 1.786 -0.409
ENSG00000049618 E076 239.5409502 0.0002475983 2.478481e-02 6.143169e-02 6 157200705 157201488 784 + 2.379 2.378 -0.004
ENSG00000049618 E077 0.6633060 0.0261322568 4.013333e-01 5.450239e-01 6 157203658 157203865 208 + 0.266 0.139 -1.169
ENSG00000049618 E078 95.8165985 0.0003693871 9.291417e-01 9.594463e-01 6 157203866 157203996 131 + 1.962 2.009 0.159
ENSG00000049618 E079 2.2260284 0.0067432158 4.035461e-05 2.323585e-04 6 157203997 157206166 2170 + 0.719 0.000 -16.282
ENSG00000049618 E080 175.3297791 0.0003195752 5.179389e-01 6.522589e-01 6 157206167 157206485 319 + 2.210 2.279 0.228
ENSG00000049618 E081 114.1319531 0.0002627095 1.259870e-01 2.285537e-01 6 157206486 157206616 131 + 2.006 2.107 0.339
ENSG00000049618 E082 82.5185059 0.0004342241 4.680756e-01 6.075080e-01 6 157206617 157206693 77 + 1.878 1.956 0.265
ENSG00000049618 E083 411.7045456 0.0005003146 5.996866e-08 6.358228e-07 6 157206694 157207491 798 + 2.532 2.687 0.518
ENSG00000049618 E084 479.6971369 0.0071681874 1.240432e-08 1.503686e-07 6 157207492 157208474 983 + 2.520 2.807 0.958
ENSG00000049618 E085 323.2971073 0.0174360321 1.443108e-11 2.928995e-10 6 157208475 157210779 2305 + 2.208 2.701 1.645