ENSG00000038382

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000344135 ENSG00000038382 HEK293_OSMI2_2hA HEK293_TMG_2hB TRIO protein_coding protein_coding 10.28557 9.031253 9.635118 0.9123636 0.2687249 0.09327627 1.4551993 2.57898102 0.0000000 0.43849856 0.00000000 -8.0162406 0.13500000 0.283300000 0.00000000 -0.28330000 3.214767e-23 3.214767e-23 FALSE TRUE
ENST00000344204 ENSG00000038382 HEK293_OSMI2_2hA HEK293_TMG_2hB TRIO protein_coding protein_coding 10.28557 9.031253 9.635118 0.9123636 0.2687249 0.09327627 0.3773829 0.07444775 1.0963072 0.05058166 0.01913251 3.7115493 0.04200833 0.009466667 0.11386667 0.10440000 2.798642e-10 3.214767e-23 FALSE TRUE
ENST00000503399 ENSG00000038382 HEK293_OSMI2_2hA HEK293_TMG_2hB TRIO protein_coding retained_intron 10.28557 9.031253 9.635118 0.9123636 0.2687249 0.09327627 0.4407393 0.07460317 0.6014362 0.07460317 0.39987982 2.8534185 0.04196667 0.006933333 0.06133333 0.05440000 1.932516e-01 3.214767e-23 FALSE FALSE
ENST00000508283 ENSG00000038382 HEK293_OSMI2_2hA HEK293_TMG_2hB TRIO protein_coding retained_intron 10.28557 9.031253 9.635118 0.9123636 0.2687249 0.09327627 1.2137136 0.05503660 1.6782730 0.05503660 0.43988908 4.6981525 0.11045417 0.006333333 0.17270000 0.16636667 7.476641e-04 3.214767e-23 FALSE FALSE
ENST00000508717 ENSG00000038382 HEK293_OSMI2_2hA HEK293_TMG_2hB TRIO protein_coding retained_intron 10.28557 9.031253 9.635118 0.9123636 0.2687249 0.09327627 0.8392732 2.35548494 0.0000000 0.56728247 0.00000000 -7.8859922 0.08231667 0.254000000 0.00000000 -0.25400000 4.765581e-17 3.214767e-23 FALSE TRUE
ENST00000512070 ENSG00000038382 HEK293_OSMI2_2hA HEK293_TMG_2hB TRIO protein_coding nonsense_mediated_decay 10.28557 9.031253 9.635118 0.9123636 0.2687249 0.09327627 2.0538518 0.70445697 2.7209296 0.49607480 0.21970978 1.9344731 0.20633333 0.086466667 0.28206667 0.19560000 2.696924e-01 3.214767e-23 TRUE TRUE
MSTRG.25950.5 ENSG00000038382 HEK293_OSMI2_2hA HEK293_TMG_2hB TRIO protein_coding   10.28557 9.031253 9.635118 0.9123636 0.2687249 0.09327627 2.6404669 2.51156188 2.1760899 0.25700692 0.26767144 -0.2059649 0.25935417 0.280200000 0.22613333 -0.05406667 5.763124e-01 3.214767e-23 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000038382 E001 3.8794184 0.0040139736 4.913619e-05 2.773915e-04 5 14143342 14143684 343 + 0.877 0.250 -3.072
ENSG00000038382 E002 0.4502799 0.0281781451 1.294646e-01 2.334140e-01 5 14143685 14143701 17 + 0.260 0.000 -20.358
ENSG00000038382 E003 1.6671076 0.0081841302 1.178600e-02 3.302113e-02 5 14143702 14143769 68 + 0.571 0.143 -2.809
ENSG00000038382 E004 1.3683431 0.0097207197 3.390170e-02 7.955329e-02 5 14143770 14143774 5 + 0.502 0.143 -2.487
ENSG00000038382 E005 2.9342852 0.0107999984 1.939046e-03 7.037423e-03 5 14143775 14143836 62 + 0.751 0.250 -2.574
ENSG00000038382 E006 5.5861504 0.0029148246 6.062684e-04 2.556212e-03 5 14143837 14143882 46 + 0.963 0.523 -1.809
ENSG00000038382 E007 0.2944980 0.3662549445 3.720874e-01   5 14183798 14183959 162 + 0.189 0.000 -19.772
ENSG00000038382 E008 11.9860291 0.0014345564 5.891385e-06 4.127761e-05 5 14270825 14270899 75 + 1.259 0.834 -1.558
ENSG00000038382 E009 22.6115374 0.0008523678 3.192362e-07 2.936697e-06 5 14280322 14280436 115 + 1.499 1.153 -1.207
ENSG00000038382 E010 35.7761309 0.0020317177 1.442467e-07 1.421215e-06 5 14286871 14287063 193 + 1.675 1.386 -0.990
ENSG00000038382 E011 0.2955422 0.0297631747 8.582825e-01   5 14287064 14287104 41 + 0.105 0.142 0.510
ENSG00000038382 E012 45.1891246 0.0084818983 1.240829e-05 8.067797e-05 5 14290716 14290976 261 + 1.761 1.503 -0.876
ENSG00000038382 E013 43.2167991 0.0007491446 1.366357e-09 1.974614e-08 5 14290977 14291228 252 + 1.753 1.457 -1.009
ENSG00000038382 E014 15.0407905 0.0012821657 2.440911e-05 1.484553e-04 5 14293012 14293040 29 + 1.326 0.980 -1.237
ENSG00000038382 E015 24.1186725 0.0013353694 2.532499e-08 2.893693e-07 5 14293041 14293134 94 + 1.531 1.153 -1.318
ENSG00000038382 E016 37.1021593 0.0005563578 4.091084e-13 1.066818e-11 5 14297072 14297263 192 + 1.720 1.319 -1.377
ENSG00000038382 E017 0.0000000       5 14297264 14297513 250 +      
ENSG00000038382 E018 29.5632117 0.0061476289 2.059045e-06 1.597117e-05 5 14304461 14304592 132 + 1.602 1.285 -1.093
ENSG00000038382 E019 38.4647463 0.0006719069 1.826268e-10 3.080040e-09 5 14316513 14316743 231 + 1.716 1.379 -1.151
ENSG00000038382 E020 31.7512367 0.0006469864 1.177687e-06 9.635886e-06 5 14330778 14330900 123 + 1.610 1.342 -0.921
ENSG00000038382 E021 36.0355763 0.0030117294 7.976518e-03 2.371847e-02 5 14336536 14336727 192 + 1.613 1.492 -0.416
ENSG00000038382 E022 28.0693116 0.0015825887 5.061897e-02 1.102571e-01 5 14358178 14358347 170 + 1.499 1.413 -0.294
ENSG00000038382 E023 31.4736342 0.0050611710 4.272544e-05 2.447006e-04 5 14359357 14359531 175 + 1.602 1.352 -0.860
ENSG00000038382 E024 38.7776800 0.0005633161 3.470393e-06 2.562863e-05 5 14363732 14363927 196 + 1.685 1.462 -0.760
ENSG00000038382 E025 31.8963872 0.0006319182 1.174727e-02 3.293112e-02 5 14364650 14364816 167 + 1.561 1.450 -0.380
ENSG00000038382 E026 30.0245714 0.0007934468 5.267268e-03 1.665918e-02 5 14366860 14366979 120 + 1.541 1.407 -0.463
ENSG00000038382 E027 46.7063529 0.0004971234 4.746722e-05 2.689312e-04 5 14368708 14368899 192 + 1.742 1.575 -0.569
ENSG00000038382 E028 47.1777023 0.0061084326 1.612672e-04 7.974812e-04 5 14369374 14369523 150 + 1.757 1.563 -0.659
ENSG00000038382 E029 41.0572467 0.0005664833 4.648338e-05 2.639017e-04 5 14374229 14374343 115 + 1.690 1.507 -0.624
ENSG00000038382 E030 45.9650473 0.0037776285 8.700462e-04 3.509510e-03 5 14378012 14378127 116 + 1.731 1.580 -0.513
ENSG00000038382 E031 48.7431727 0.0063792528 1.406088e-04 7.061115e-04 5 14381130 14381252 123 + 1.773 1.576 -0.668
ENSG00000038382 E032 0.1482932 0.0426247002 3.878272e-01   5 14387343 14387437 95 + 0.000 0.142 19.519
ENSG00000038382 E033 62.9764930 0.0169359444 1.194695e-01 2.191893e-01 5 14387438 14387632 195 + 1.832 1.764 -0.230
ENSG00000038382 E034 46.9838315 0.0104795928 6.086131e-01 7.282953e-01 5 14387732 14387847 116 + 1.670 1.687 0.059
ENSG00000038382 E035 0.0000000       5 14387848 14387950 103 +      
ENSG00000038382 E036 36.6533344 0.0212883608 3.676777e-01 5.120316e-01 5 14388613 14388679 67 + 1.583 1.560 -0.079
ENSG00000038382 E037 43.7931092 0.0166974442 4.050839e-01 5.487694e-01 5 14389289 14389398 110 + 1.652 1.642 -0.033
ENSG00000038382 E038 32.4080316 0.0065723900 3.093099e-01 4.515863e-01 5 14390231 14390300 70 + 1.527 1.504 -0.081
ENSG00000038382 E039 0.1451727 0.0430371895 6.079357e-01   5 14390334 14390472 139 + 0.105 0.000 -18.772
ENSG00000038382 E040 40.2365840 0.0020171065 2.808870e-01 4.207597e-01 5 14390901 14390990 90 + 1.613 1.598 -0.053
ENSG00000038382 E041 42.9678567 0.0005711141 1.472146e-01 2.578909e-01 5 14394038 14394130 93 + 1.649 1.618 -0.108
ENSG00000038382 E042 36.3067327 0.0045692248 9.283102e-01 9.588815e-01 5 14397043 14397154 112 + 1.552 1.592 0.138
ENSG00000038382 E043 0.1817044 0.0392541610 3.876022e-01   5 14397155 14397341 187 + 0.000 0.143 19.524
ENSG00000038382 E044 47.8765598 0.0059462241 8.601807e-01 9.138039e-01 5 14398880 14399023 144 + 1.672 1.708 0.122
ENSG00000038382 E045 32.7846932 0.0160912306 8.324446e-01 8.950178e-01 5 14399024 14399070 47 + 1.517 1.545 0.096
ENSG00000038382 E046 6.4689315 0.0900901297 3.437884e-01 4.878482e-01 5 14399071 14399400 330 + 0.770 0.986 0.829
ENSG00000038382 E047 37.2906238 0.0005617550 6.065898e-01 7.266843e-01 5 14400963 14401064 102 + 1.571 1.588 0.058
ENSG00000038382 E048 44.0484367 0.0024959311 9.458647e-01 9.700064e-01 5 14405848 14405990 143 + 1.625 1.669 0.149
ENSG00000038382 E049 0.2924217 0.0290785164 2.748768e-01   5 14406214 14406572 359 + 0.189 0.000 -19.772
ENSG00000038382 E050 38.9203279 0.0027407893 7.296025e-01 8.217609e-01 5 14406573 14406672 100 + 1.584 1.610 0.090
ENSG00000038382 E051 0.0000000       5 14418783 14418830 48 +      
ENSG00000038382 E052 22.8591380 0.0013035867 6.080011e-01 7.278685e-01 5 14419778 14419813 36 + 1.337 1.419 0.287
ENSG00000038382 E053 51.4834194 0.0004431767 6.368183e-01 7.507643e-01 5 14419814 14420021 208 + 1.702 1.725 0.080
ENSG00000038382 E054 0.1472490 0.0429282114 6.078046e-01   5 14420022 14420186 165 + 0.105 0.000 -18.773
ENSG00000038382 E055 1.3306604 0.1879332860 6.568869e-03 2.010489e-02 5 14420458 14420800 343 + 0.000 0.576 22.352
ENSG00000038382 E056 0.0000000       5 14440819 14441042 224 +      
ENSG00000038382 E057 0.0000000       5 14441043 14441360 318 +      
ENSG00000038382 E058 50.4748815 0.0156384394 3.374919e-01 4.813831e-01 5 14461019 14461311 293 + 1.711 1.697 -0.049
ENSG00000038382 E059 37.6599807 0.0021983160 3.213215e-02 7.611363e-02 5 14462755 14462925 171 + 1.616 1.533 -0.284
ENSG00000038382 E060 35.8821821 0.0021420729 1.028143e-01 1.947825e-01 5 14465545 14465640 96 + 1.587 1.532 -0.185
ENSG00000038382 E061 0.6255398 0.0212845113 2.134832e-01 3.426421e-01 5 14465641 14466451 811 + 0.105 0.335 2.095
ENSG00000038382 E062 50.8389537 0.0004723294 6.351178e-03 1.953614e-02 5 14471318 14471466 149 + 1.746 1.656 -0.305
ENSG00000038382 E063 43.3188801 0.0005814699 1.479082e-02 4.002224e-02 5 14472592 14472658 67 + 1.678 1.592 -0.290
ENSG00000038382 E064 29.3490990 0.0006694172 8.622729e-03 2.534432e-02 5 14473994 14474011 18 + 1.531 1.406 -0.428
ENSG00000038382 E065 48.8263272 0.0004384205 1.206222e-01 2.208497e-01 5 14474012 14474097 86 + 1.706 1.675 -0.108
ENSG00000038382 E066 42.5039045 0.0005320742 5.834741e-01 7.075890e-01 5 14476894 14476963 70 + 1.599 1.675 0.258
ENSG00000038382 E067 1.3349319 0.0098407369 3.395507e-02 7.966668e-02 5 14476964 14477333 370 + 0.502 0.143 -2.488
ENSG00000038382 E068 47.6104455 0.0005053839 7.095552e-01 8.069049e-01 5 14479261 14479320 60 + 1.647 1.712 0.223
ENSG00000038382 E069 37.2241550 0.0010056757 1.627190e-01 2.787015e-01 5 14479321 14479350 30 + 1.510 1.638 0.437
ENSG00000038382 E070 54.7595215 0.0055852594 5.055873e-01 6.413472e-01 5 14479919 14480011 93 + 1.697 1.784 0.295
ENSG00000038382 E071 42.7433808 0.0007198535 8.429225e-01 9.021425e-01 5 14481234 14481284 51 + 1.613 1.649 0.122
ENSG00000038382 E072 46.0654235 0.0014491100 9.965243e-02 1.899549e-01 5 14481541 14481618 78 + 1.593 1.729 0.465
ENSG00000038382 E073 0.7363589 0.0155341963 3.243001e-02 7.668590e-02 5 14481619 14481796 178 + 0.373 0.000 -21.094
ENSG00000038382 E074 1.0362667 0.1360687381 6.419500e-01 7.548881e-01 5 14482417 14482581 165 + 0.320 0.253 -0.461
ENSG00000038382 E075 69.7696159 0.0005563780 1.234742e-02 3.436627e-02 5 14482582 14482773 192 + 1.765 1.920 0.521
ENSG00000038382 E076 60.9343019 0.0004104252 9.817256e-01 9.926292e-01 5 14485069 14485246 178 + 1.763 1.809 0.155
ENSG00000038382 E077 43.2146968 0.0005777893 3.749956e-01 5.194329e-01 5 14487464 14487730 267 + 1.639 1.637 -0.004
ENSG00000038382 E078 58.3419619 0.0011644081 1.534517e-01 2.663664e-01 5 14487731 14488260 530 + 1.706 1.823 0.392
ENSG00000038382 E079 0.7373013 0.2733500439 6.357046e-01 7.499129e-01 5 14488261 14488447 187 + 0.189 0.327 1.046
ENSG00000038382 E080 3.1804173 0.0060673427 9.214784e-01 9.544319e-01 5 14488448 14489029 582 + 0.602 0.653 0.222
ENSG00000038382 E081 2.1046968 0.0082042091 3.221161e-01 4.654052e-01 5 14489030 14489069 40 + 0.373 0.571 1.000
ENSG00000038382 E082 1.8112310 0.0095701369 3.130936e-01 4.556251e-01 5 14489070 14489165 96 + 0.320 0.523 1.101
ENSG00000038382 E083 1.5230782 0.0592763514 5.582626e-01 6.865445e-01 5 14492370 14492566 197 + 0.421 0.338 -0.476
ENSG00000038382 E084 87.6595313 0.0025814131 3.225065e-02 7.633419e-02 5 14492567 14492814 248 + 1.870 2.012 0.480
ENSG00000038382 E085 75.1226533 0.0003690658 9.755362e-03 2.816103e-02 5 14496879 14497005 127 + 1.800 1.953 0.513
ENSG00000038382 E086 27.1989429 0.0009220052 3.058319e-01 4.479626e-01 5 14497006 14497017 12 + 1.393 1.506 0.392
ENSG00000038382 E087 43.8166542 0.0005800242 1.371381e-01 2.441079e-01 5 14497847 14497874 28 + 1.583 1.709 0.427
ENSG00000038382 E088 58.5802452 0.0004333369 1.093845e-01 2.046532e-01 5 14498089 14498138 50 + 1.709 1.829 0.408
ENSG00000038382 E089 79.6873129 0.0003608991 7.977340e-03 2.372017e-02 5 14498139 14498251 113 + 1.822 1.975 0.514
ENSG00000038382 E090 0.9964372 0.2366284053 3.726988e-01 5.171210e-01 5 14498516 14498518 3 + 0.189 0.406 1.502
ENSG00000038382 E091 86.3175441 0.0003805907 2.167798e-04 1.035849e-03 5 14498519 14498640 122 + 1.836 2.025 0.637
ENSG00000038382 E092 0.7738329 0.1030861272 1.311708e-01 2.357856e-01 5 14498641 14499181 541 + 0.105 0.403 2.491
ENSG00000038382 E093 58.4672361 0.0010632007 5.775318e-03 1.802142e-02 5 14502579 14502657 79 + 1.680 1.858 0.603
ENSG00000038382 E094 93.5430742 0.0122108365 4.783054e-04 2.077006e-03 5 14504393 14504593 201 + 1.822 2.099 0.931
ENSG00000038382 E095 2.1453852 0.0071570864 2.453079e-01 3.803886e-01 5 14504594 14504674 81 + 0.571 0.407 -0.810
ENSG00000038382 E096 78.7824672 0.0011592222 2.313940e-09 3.207265e-08 5 14507122 14507260 139 + 1.733 2.035 1.015
ENSG00000038382 E097 482.1312830 0.0132346299 3.044068e-11 5.857095e-10 5 14507880 14510204 2325 + 2.452 2.854 1.338
ENSG00000038382 E098 0.8083770 0.1314914514 5.053527e-01 6.411569e-01 5 14531744 14532128 385 + 0.189 0.334 1.092