ENSG00000009830

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000261534 ENSG00000009830 HEK293_OSMI2_2hA HEK293_TMG_2hB POMT2 protein_coding protein_coding 33.75835 37.85991 26.44746 1.331354 0.8658653 -0.5173774 9.945339 10.743588 6.583086 2.4257151 0.3155025 -0.7057925 0.28927083 0.28053333 0.24970000 -0.030833333 9.061733e-01 7.424736e-15 FALSE TRUE
ENST00000452340 ENSG00000009830 HEK293_OSMI2_2hA HEK293_TMG_2hB POMT2 protein_coding retained_intron 33.75835 37.85991 26.44746 1.331354 0.8658653 -0.5173774 1.591291 0.742699 2.415957 0.7426990 0.2073705 1.6884088 0.05100000 0.02103333 0.09110000 0.070066667 1.093844e-01 7.424736e-15 TRUE TRUE
ENST00000682895 ENSG00000009830 HEK293_OSMI2_2hA HEK293_TMG_2hB POMT2 protein_coding processed_transcript 33.75835 37.85991 26.44746 1.331354 0.8658653 -0.5173774 7.822495 7.525485 5.040207 0.2658189 0.9297154 -0.5773581 0.23582917 0.19933333 0.19290000 -0.006433333 9.397390e-01 7.424736e-15 FALSE TRUE
ENST00000683380 ENSG00000009830 HEK293_OSMI2_2hA HEK293_TMG_2hB POMT2 protein_coding processed_transcript 33.75835 37.85991 26.44746 1.331354 0.8658653 -0.5173774 1.340339 4.928443 0.000000 1.2800817 0.0000000 -8.9479124 0.03536667 0.13253333 0.00000000 -0.132533333 1.025573e-13 7.424736e-15 FALSE TRUE
MSTRG.9983.23 ENSG00000009830 HEK293_OSMI2_2hA HEK293_TMG_2hB POMT2 protein_coding   33.75835 37.85991 26.44746 1.331354 0.8658653 -0.5173774 1.896785 2.167543 2.557165 0.3617136 0.5592027 0.2374747 0.05751667 0.05753333 0.09733333 0.039800000 4.325612e-01 7.424736e-15 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000009830 E001 1.5414354 0.0097387370 7.618184e-03 2.281950e-02 14 77274956 77274957 2 - 0.000 0.511 12.757
ENSG00000009830 E002 1.7231398 0.0150963231 4.887621e-03 1.561722e-02 14 77274958 77274966 9 - 0.000 0.543 15.483
ENSG00000009830 E003 1.8714330 0.0138084609 2.992892e-03 1.024343e-02 14 77274967 77274970 4 - 0.000 0.573 15.633
ENSG00000009830 E004 5.1156212 0.0044649589 7.814867e-03 2.331574e-02 14 77274971 77274975 5 - 0.431 0.845 1.822
ENSG00000009830 E005 19.6132948 0.0010158000 8.344649e-04 3.382116e-03 14 77274976 77275029 54 - 1.065 1.357 1.034
ENSG00000009830 E006 207.3493814 0.0036427817 5.739149e-09 7.412493e-08 14 77275030 77275453 424 - 2.121 2.355 0.783
ENSG00000009830 E007 218.1333970 0.0009821949 1.471196e-14 4.732785e-13 14 77275454 77275812 359 - 2.141 2.375 0.780
ENSG00000009830 E008 64.1142875 0.0003905544 2.301934e-03 8.156789e-03 14 77275813 77275816 4 - 1.682 1.825 0.484
ENSG00000009830 E009 514.1063771 0.0001260197 2.830677e-03 9.766044e-03 14 77275817 77276982 1166 - 2.650 2.697 0.156
ENSG00000009830 E010 48.7024900 0.0127890862 4.232423e-01 5.663365e-01 14 77276983 77276999 17 - 1.708 1.647 -0.207
ENSG00000009830 E011 46.6825824 0.0168185898 6.853988e-01 7.881585e-01 14 77277000 77277007 8 - 1.671 1.639 -0.109
ENSG00000009830 E012 44.6325655 0.0150694204 4.805305e-01 6.188062e-01 14 77277008 77277009 2 - 1.667 1.610 -0.192
ENSG00000009830 E013 46.6319323 0.0149952125 4.138599e-01 5.572659e-01 14 77277010 77277017 8 - 1.690 1.625 -0.222
ENSG00000009830 E014 45.9600088 0.0112478737 2.879027e-01 4.284381e-01 14 77277018 77277023 6 - 1.694 1.615 -0.268
ENSG00000009830 E015 55.6368909 0.0044065448 1.207458e-01 2.210297e-01 14 77277024 77277037 14 - 1.784 1.692 -0.311
ENSG00000009830 E016 98.1009725 0.0065049299 6.344063e-01 7.488760e-01 14 77277038 77277119 82 - 1.955 1.977 0.074
ENSG00000009830 E017 134.9486565 0.0018973876 5.300150e-04 2.271714e-03 14 77277120 77277169 50 - 2.014 2.146 0.443
ENSG00000009830 E018 178.8694217 0.0004061876 2.666586e-09 3.655404e-08 14 77277170 77277213 44 - 2.101 2.278 0.592
ENSG00000009830 E019 231.8613229 0.0002108435 3.382708e-09 4.547573e-08 14 77277214 77277278 65 - 2.232 2.382 0.499
ENSG00000009830 E020 277.9524833 0.0013956156 2.164482e-06 1.670556e-05 14 77277279 77277414 136 - 2.323 2.457 0.450
ENSG00000009830 E021 210.5536035 0.0044200135 1.000943e-03 3.961595e-03 14 77277415 77277481 67 - 2.203 2.338 0.450
ENSG00000009830 E022 1.8413182 0.0081757453 5.199516e-02 1.127169e-01 14 77278286 77278393 108 - 0.154 0.512 2.406
ENSG00000009830 E023 215.1532554 0.0005008754 1.779325e-04 8.692759e-04 14 77278394 77278508 115 - 2.234 2.335 0.336
ENSG00000009830 E024 152.5780958 0.0013951932 3.262945e-03 1.104105e-02 14 77278729 77278772 44 - 2.086 2.187 0.339
ENSG00000009830 E025 120.0807629 0.0010070718 2.088329e-03 7.497210e-03 14 77278773 77278783 11 - 1.975 2.088 0.379
ENSG00000009830 E026 166.4056058 0.0046008219 6.024791e-03 1.867744e-02 14 77278784 77278858 75 - 2.112 2.231 0.399
ENSG00000009830 E027 91.9999820 0.0012653801 1.623328e-03 6.036128e-03 14 77278859 77278869 11 - 1.846 1.978 0.445
ENSG00000009830 E028 17.6700867 0.0011840895 1.005965e-02 2.890683e-02 14 77278870 77278961 92 - 1.379 1.168 -0.740
ENSG00000009830 E029 51.8598317 0.0107939919 3.898509e-02 8.916801e-02 14 77278962 77279366 405 - 1.790 1.645 -0.491
ENSG00000009830 E030 26.7286972 0.0008190426 7.141828e-03 2.159235e-02 14 77279367 77279536 170 - 1.527 1.342 -0.640
ENSG00000009830 E031 26.1621023 0.0150927105 1.556959e-02 4.177761e-02 14 77279537 77279586 50 - 1.533 1.316 -0.748
ENSG00000009830 E032 18.1107139 0.0184296816 5.533435e-03 1.737466e-02 14 77279587 77279622 36 - 1.416 1.133 -0.992
ENSG00000009830 E033 19.6333256 0.0109194895 2.380547e-02 5.941396e-02 14 77279623 77279683 61 - 1.416 1.210 -0.721
ENSG00000009830 E034 20.6127102 0.0020967009 1.361830e-02 3.735154e-02 14 77279684 77279822 139 - 1.430 1.236 -0.675
ENSG00000009830 E035 216.0637641 0.0001856116 1.219383e-02 3.399632e-02 14 77279823 77279928 106 - 2.266 2.327 0.206
ENSG00000009830 E036 190.8814344 0.0001905469 7.330749e-02 1.488121e-01 14 77280021 77280080 60 - 2.224 2.269 0.153
ENSG00000009830 E037 3.2691113 0.0097419990 4.618846e-02 1.023842e-01 14 77280160 77280189 30 - 0.785 0.477 -1.349
ENSG00000009830 E038 2.9422342 0.0054716758 4.379830e-02 9.802190e-02 14 77280190 77280218 29 - 0.753 0.439 -1.417
ENSG00000009830 E039 4.3125508 0.0037582979 5.712921e-02 1.216865e-01 14 77280306 77280391 86 - 0.867 0.601 -1.088
ENSG00000009830 E040 234.5305501 0.0001925717 9.928401e-01 9.996191e-01 14 77280392 77280463 72 - 2.347 2.344 -0.010
ENSG00000009830 E041 2.0218912 0.0072438620 1.225033e-01 2.235169e-01 14 77280464 77280542 79 - 0.267 0.543 1.555
ENSG00000009830 E042 1.8026371 0.1854141429 9.732868e-01 9.873163e-01 14 77280624 77280689 66 - 0.431 0.437 0.027
ENSG00000009830 E043 249.9015110 0.0001688510 8.577196e-01 9.121368e-01 14 77283797 77283873 77 - 2.371 2.372 0.003
ENSG00000009830 E044 11.4981992 0.0223551160 6.518931e-04 2.722525e-03 14 77283874 77283987 114 - 1.303 0.900 -1.457
ENSG00000009830 E045 8.8927111 0.0203789646 1.578582e-05 1.002204e-04 14 77283988 77284033 46 - 1.254 0.719 -2.003
ENSG00000009830 E046 6.7107056 0.0032454843 8.546977e-05 4.538750e-04 14 77284034 77284063 30 - 1.124 0.652 -1.817
ENSG00000009830 E047 7.1276891 0.0022764977 6.418438e-07 5.555598e-06 14 77284064 77284100 37 - 1.188 0.601 -2.269
ENSG00000009830 E048 17.5987375 0.0154597593 7.965252e-05 4.262279e-04 14 77284101 77284310 210 - 1.456 1.064 -1.381
ENSG00000009830 E049 8.9240591 0.0019556026 7.120545e-07 6.105300e-06 14 77284311 77284340 30 - 1.255 0.719 -2.000
ENSG00000009830 E050 4.7200475 0.0053189725 1.347629e-06 1.088439e-05 14 77284341 77284351 11 - 1.065 0.397 -2.825
ENSG00000009830 E051 6.2429248 0.0029302330 8.826338e-07 7.415838e-06 14 77284352 77284381 30 - 1.151 0.543 -2.399
ENSG00000009830 E052 15.5845471 0.0014514052 1.083269e-14 3.544421e-13 14 77284382 77284881 500 - 1.522 0.844 -2.429
ENSG00000009830 E053 5.8493361 0.0029443164 6.153647e-05 3.390403e-04 14 77284882 77284949 68 - 1.080 0.573 -2.007
ENSG00000009830 E054 153.5330429 0.0002532847 9.742855e-01 9.879644e-01 14 77284950 77284968 19 - 2.163 2.159 -0.014
ENSG00000009830 E055 218.5846782 0.0002380369 4.331377e-01 5.755775e-01 14 77284969 77285041 73 - 2.300 2.317 0.056
ENSG00000009830 E056 1.2618791 0.0103427966 3.187658e-02 7.561507e-02 14 77285281 77285479 199 - 0.550 0.176 -2.351
ENSG00000009830 E057 0.8481309 0.0143134820 8.993809e-01 9.397960e-01 14 77285480 77285480 1 - 0.267 0.243 -0.180
ENSG00000009830 E058 197.7321293 0.0002424237 5.629332e-01 6.904710e-01 14 77285481 77285566 86 - 2.262 2.274 0.042
ENSG00000009830 E059 203.6773553 0.0002414269 9.571745e-02 1.839645e-01 14 77285567 77285632 66 - 2.314 2.267 -0.156
ENSG00000009830 E060 0.2924217 0.0290785164 9.406489e-02   14 77286740 77286743 4 - 0.267 0.000 -14.836
ENSG00000009830 E061 134.3138804 0.0016770763 2.606993e-02 6.408625e-02 14 77286744 77286747 4 - 2.158 2.074 -0.283
ENSG00000009830 E062 196.1057482 0.0062144113 4.859451e-02 1.066729e-01 14 77286748 77286822 75 - 2.327 2.233 -0.315
ENSG00000009830 E063 0.2214452 0.0386197986 7.784685e-01   14 77286823 77286982 160 - 0.000 0.097 11.949
ENSG00000009830 E064 0.5944058 0.2729431792 9.361944e-01 9.638512e-01 14 77286983 77287232 250 - 0.154 0.181 0.281
ENSG00000009830 E065 3.1105987 0.0629936988 7.090821e-01 8.065543e-01 14 77287233 77287271 39 - 0.643 0.572 -0.316
ENSG00000009830 E066 0.2214452 0.0386197986 7.784685e-01   14 77287580 77287824 245 - 0.000 0.097 11.949
ENSG00000009830 E067 165.6537085 0.0067443017 4.757247e-03 1.525338e-02 14 77288762 77288831 70 - 2.283 2.142 -0.470
ENSG00000009830 E068 166.0390940 0.0041783259 2.740002e-03 9.492277e-03 14 77291314 77291380 67 - 2.276 2.147 -0.430
ENSG00000009830 E069 1.8091572 0.0079017352 1.849998e-02 4.823050e-02 14 77291381 77291493 113 - 0.643 0.243 -2.179
ENSG00000009830 E070 4.5717779 0.0036015507 1.547781e-04 7.682416e-04 14 77291514 77291664 151 - 0.996 0.477 -2.158
ENSG00000009830 E071 7.8725647 0.0024108307 1.884052e-06 1.474361e-05 14 77292770 77293290 521 - 1.200 0.653 -2.087
ENSG00000009830 E072 172.3829584 0.0002378315 4.164259e-04 1.837358e-03 14 77296164 77296273 110 - 2.275 2.173 -0.342
ENSG00000009830 E073 0.0000000       14 77296369 77296411 43 -      
ENSG00000009830 E074 0.0000000       14 77296412 77296507 96 -      
ENSG00000009830 E075 132.2300969 0.0004834379 2.327448e-01 3.657078e-01 14 77298689 77298771 83 - 2.121 2.078 -0.144
ENSG00000009830 E076 113.5841982 0.0003048404 8.059721e-01 8.766699e-01 14 77299455 77299515 61 - 2.025 2.030 0.018
ENSG00000009830 E077 75.3540181 0.0003469087 5.324949e-01 6.648579e-01 14 77299516 77299523 8 - 1.874 1.844 -0.100
ENSG00000009830 E078 97.5820619 0.0003613364 7.575288e-01 8.423316e-01 14 77299524 77299561 38 - 1.977 1.962 -0.050
ENSG00000009830 E079 3.4321637 0.0053612373 8.029380e-01 8.745146e-01 14 77299562 77300133 572 - 0.643 0.602 -0.180
ENSG00000009830 E080 0.7331471 0.0172671820 1.086029e-01 2.034742e-01 14 77300134 77300169 36 - 0.000 0.301 14.182
ENSG00000009830 E081 3.7622671 0.0041578185 4.042084e-03 1.325993e-02 14 77300170 77300971 802 - 0.892 0.477 -1.766
ENSG00000009830 E082 1.5824134 0.0093372660 3.855148e-02 8.836936e-02 14 77300972 77301001 30 - 0.599 0.243 -1.988
ENSG00000009830 E083 1.8456783 0.0076124434 8.906146e-05 4.706132e-04 14 77301002 77301089 88 - 0.753 0.097 -4.224
ENSG00000009830 E084 109.2070699 0.0006716280 1.436316e-01 2.529492e-01 14 77301090 77301145 56 - 2.052 1.995 -0.190
ENSG00000009830 E085 107.8514757 0.0005247423 1.803230e-01 3.015799e-01 14 77301146 77301221 76 - 2.042 1.990 -0.174
ENSG00000009830 E086 87.5725357 0.0015507329 4.074843e-01 5.510505e-01 14 77301222 77301249 28 - 1.944 1.906 -0.131
ENSG00000009830 E087 109.7512382 0.0005474757 7.034674e-03 2.131502e-02 14 77302835 77302893 59 - 2.080 1.981 -0.334
ENSG00000009830 E088 123.2706630 0.0004918036 3.177559e-02 7.541707e-02 14 77302894 77302943 50 - 2.114 2.038 -0.255
ENSG00000009830 E089 0.7416549 0.1239201864 6.314616e-01 7.464638e-01 14 77302944 77302961 18 - 0.267 0.178 -0.743
ENSG00000009830 E090 89.7314217 0.0026142993 5.455243e-02 1.172051e-01 14 77304692 77304693 2 - 1.987 1.896 -0.302
ENSG00000009830 E091 150.7243643 0.0005141379 2.045748e-02 5.245389e-02 14 77304694 77304772 79 - 2.201 2.126 -0.252
ENSG00000009830 E092 88.3383885 0.0003738476 1.882325e-02 4.894329e-02 14 77304773 77304800 28 - 1.984 1.890 -0.318
ENSG00000009830 E093 3.6513211 0.0046607013 1.511758e-01 2.632698e-01 14 77304801 77305744 944 - 0.785 0.573 -0.893
ENSG00000009830 E094 2.4324171 0.0066972741 7.610652e-01 8.449951e-01 14 77305745 77305774 30 - 0.494 0.543 0.232
ENSG00000009830 E095 3.5739993 0.0044999736 4.107005e-01 5.543079e-01 14 77305775 77305830 56 - 0.550 0.676 0.556
ENSG00000009830 E096 4.1202453 0.0040092621 4.128674e-01 5.564431e-01 14 77305831 77305860 30 - 0.599 0.720 0.515
ENSG00000009830 E097 5.8131987 0.0028938364 7.239605e-01 8.176416e-01 14 77305861 77306245 385 - 0.785 0.829 0.172
ENSG00000009830 E098 5.8624053 0.0027389034 5.867028e-01 7.102178e-01 14 77306246 77306336 91 - 0.867 0.795 -0.281
ENSG00000009830 E099 114.8971845 0.0004108538 1.782291e-04 8.702985e-04 14 77306337 77306401 65 - 2.121 1.989 -0.441
ENSG00000009830 E100 95.4221925 0.0048906783 3.019075e-03 1.032260e-02 14 77306402 77306441 40 - 2.052 1.902 -0.502
ENSG00000009830 E101 0.1817044 0.0393841178 7.789720e-01   14 77306442 77306503 62 - 0.000 0.097 11.939
ENSG00000009830 E102 0.3634088 0.3673888268 4.803243e-01   14 77306632 77306890 259 - 0.000 0.177 12.036
ENSG00000009830 E103 0.5106578 0.2631931103 9.457411e-01 9.699461e-01 14 77306891 77306920 30 - 0.154 0.177 0.243
ENSG00000009830 E104 0.2965864 0.2094179589 4.448905e-01   14 77307555 77307582 28 - 0.000 0.173 12.215
ENSG00000009830 E105 0.4439371 0.0215520817 2.981473e-02 7.160002e-02 14 77308966 77309027 62 - 0.357 0.000 -15.539
ENSG00000009830 E106 96.4761981 0.0003490899 5.097450e-09 6.640742e-08 14 77311949 77312033 85 - 2.092 1.875 -0.731
ENSG00000009830 E107 0.2966881 0.0292950921 9.398286e-02   14 77312298 77312635 338 - 0.267 0.000 -14.833
ENSG00000009830 E108 0.0000000       14 77315655 77315684 30 -      
ENSG00000009830 E109 0.0000000       14 77319500 77319595 96 -      
ENSG00000009830 E110 0.0000000       14 77320308 77320361 54 -      
ENSG00000009830 E111 0.6652806 0.0188615620 6.118240e-01 7.308810e-01 14 77320362 77320433 72 - 0.154 0.243 0.818
ENSG00000009830 E112 153.5949504 0.0172725380 3.827598e-03 1.265824e-02 14 77320434 77320884 451 - 2.282 2.085 -0.660