ENSG00000005302

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000312196 ENSG00000005302 HEK293_OSMI2_2hA HEK293_TMG_2hB MSL3 protein_coding protein_coding 13.91644 11.33645 18.42811 0.5726176 0.9545459 0.7004501 7.6584027 7.4145653 9.54127694 0.5692585 0.37072913 0.3633871 0.56496667 0.65290000 0.522400000 -0.130500000 0.16097037 0.000614957 FALSE TRUE
ENST00000361672 ENSG00000005302 HEK293_OSMI2_2hA HEK293_TMG_2hB MSL3 protein_coding protein_coding 13.91644 11.33645 18.42811 0.5726176 0.9545459 0.7004501 0.2146534 0.7570945 0.05147995 0.2839973 0.05147995 -3.6412166 0.01787500 0.06646667 0.002966667 -0.063500000 0.02785942 0.000614957 FALSE TRUE
ENST00000398527 ENSG00000005302 HEK293_OSMI2_2hA HEK293_TMG_2hB MSL3 protein_coding protein_coding 13.91644 11.33645 18.42811 0.5726176 0.9545459 0.7004501 1.0716939 0.8953111 1.52446621 0.3030504 0.38564183 0.7612513 0.07528333 0.07890000 0.081833333 0.002933333 0.96630746 0.000614957 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_TMG_2hB HEK293_OSMI2_2hA log2fold_HEK293_OSMI2_2hA_HEK293_TMG_2hB
ENSG00000005302 E001 0.0000000       X 11758159 11758194 36 +      
ENSG00000005302 E002 0.1817044 0.0402538264 3.337094e-01   X 11758195 11758202 8 + 0.000 0.145 10.072
ENSG00000005302 E003 0.3289534 0.0286417231 7.759032e-01   X 11758203 11758204 2 + 0.103 0.145 0.558
ENSG00000005302 E004 2.3250263 0.0064950698 5.747381e-01 7.004967e-01 X 11758205 11758225 21 + 0.566 0.473 -0.444
ENSG00000005302 E005 6.1099937 0.0049706305 8.047171e-01 8.757520e-01 X 11758226 11758236 11 + 0.871 0.840 -0.122
ENSG00000005302 E006 12.9308792 0.0198805479 1.079334e-01 2.024682e-01 X 11758237 11758249 13 + 1.219 1.035 -0.664
ENSG00000005302 E007 14.4884022 0.0118327088 2.935252e-02 7.068576e-02 X 11758250 11758252 3 + 1.278 1.051 -0.812
ENSG00000005302 E008 18.6308925 0.0123597289 1.313966e-02 3.623020e-02 X 11758253 11758257 5 + 1.387 1.146 -0.847
ENSG00000005302 E009 23.7945955 0.0085817995 4.461923e-02 9.949831e-02 X 11758258 11758267 10 + 1.465 1.298 -0.580
ENSG00000005302 E010 47.9596384 0.0124007273 2.532216e-01 3.897222e-01 X 11758268 11758365 98 + 1.727 1.644 -0.283
ENSG00000005302 E011 0.1451727 0.0428251623 7.053637e-01   X 11758556 11758581 26 + 0.103 0.000 -12.674
ENSG00000005302 E012 1.2845674 0.3008048547 6.392963e-01 7.527020e-01 X 11758582 11758630 49 + 0.416 0.257 -0.993
ENSG00000005302 E013 4.7739544 0.1468318778 5.825987e-01 7.069337e-01 X 11758631 11758688 58 + 0.820 0.663 -0.638
ENSG00000005302 E014 7.8761115 0.0504969031 2.788650e-01 4.185362e-01 X 11758689 11758773 85 + 1.016 0.841 -0.659
ENSG00000005302 E015 2.2017017 0.0348357104 5.095821e-03 1.619235e-02 X 11758774 11759320 547 + 0.677 0.144 -3.252
ENSG00000005302 E016 0.5138669 0.0198694623 8.190135e-01 8.856987e-01 X 11759402 11759423 22 + 0.187 0.145 -0.441
ENSG00000005302 E017 1.4435834 0.0096765512 6.652741e-01 7.729645e-01 X 11759424 11759603 180 + 0.417 0.339 -0.443
ENSG00000005302 E018 1.3641904 0.0108927762 5.431314e-02 1.167930e-01 X 11759604 11759622 19 + 0.498 0.145 -2.443
ENSG00000005302 E019 1.1824861 0.0117628068 8.218744e-03 2.433789e-02 X 11759623 11759625 3 + 0.498 0.000 -15.873
ENSG00000005302 E020 1.7822050 0.0660421650 2.112648e-03 7.573321e-03 X 11759626 11759632 7 + 0.626 0.000 -15.935
ENSG00000005302 E021 2.0036502 0.0679058669 1.723057e-02 4.545718e-02 X 11759633 11759633 1 + 0.626 0.145 -3.022
ENSG00000005302 E022 2.3034588 0.0790130419 4.988718e-02 1.089714e-01 X 11759634 11759640 7 + 0.652 0.253 -2.144
ENSG00000005302 E023 2.3336478 0.0305330892 1.163185e-01 2.147087e-01 X 11759641 11759642 2 + 0.625 0.339 -1.442
ENSG00000005302 E024 2.4788205 0.0366405132 9.002843e-02 1.751811e-01 X 11759643 11759644 2 + 0.652 0.340 -1.557
ENSG00000005302 E025 2.9184912 0.0053848227 2.154096e-02 5.472830e-02 X 11759645 11759647 3 + 0.724 0.339 -1.858
ENSG00000005302 E026 5.4009839 0.0455792043 8.742837e-02 1.712420e-01 X 11759648 11759656 9 + 0.915 0.619 -1.195
ENSG00000005302 E027 5.1042957 0.0459287912 1.274523e-01 2.306025e-01 X 11759657 11759657 1 + 0.886 0.619 -1.083
ENSG00000005302 E028 10.2222099 0.0221805021 5.187288e-03 1.643816e-02 X 11759658 11759686 29 + 1.182 0.814 -1.365
ENSG00000005302 E029 11.9077503 0.0328506509 2.832878e-02 6.865991e-02 X 11759687 11759712 26 + 1.225 0.926 -1.086
ENSG00000005302 E030 13.5265035 0.0221530164 2.217887e-01 3.525258e-01 X 11759713 11759771 59 + 1.225 1.079 -0.523
ENSG00000005302 E031 11.5832345 0.0015062643 3.526809e-01 4.969211e-01 X 11759772 11759792 21 + 1.142 1.051 -0.328
ENSG00000005302 E032 88.2867361 0.0004165496 2.866997e-03 9.873910e-03 X 11759793 11759875 83 + 2.001 1.887 -0.383
ENSG00000005302 E033 0.1472490 0.0430678539 7.046485e-01   X 11760043 11760047 5 + 0.103 0.000 -12.672
ENSG00000005302 E034 0.1472490 0.0430678539 7.046485e-01   X 11760048 11760092 45 + 0.103 0.000 -12.672
ENSG00000005302 E035 0.1472490 0.0430678539 7.046485e-01   X 11760093 11760185 93 + 0.103 0.000 -12.672
ENSG00000005302 E036 0.0000000       X 11760186 11760221 36 +      
ENSG00000005302 E037 0.1472490 0.0430678539 7.046485e-01   X 11760222 11760309 88 + 0.103 0.000 -12.672
ENSG00000005302 E038 0.1472490 0.0430678539 7.046485e-01   X 11760310 11760339 30 + 0.103 0.000 -12.672
ENSG00000005302 E039 0.0000000       X 11760340 11760402 63 +      
ENSG00000005302 E040 92.0433979 0.0005160203 1.917877e-02 4.972846e-02 X 11760403 11760498 96 + 2.009 1.921 -0.296
ENSG00000005302 E041 81.7156850 0.0003683551 1.246416e-02 3.465160e-02 X 11760837 11760909 73 + 1.961 1.862 -0.332
ENSG00000005302 E042 60.3081255 0.0021584200 4.733788e-03 1.518819e-02 X 11760910 11760937 28 + 1.845 1.699 -0.494
ENSG00000005302 E043 2.4464415 0.0061228366 1.496221e-02 4.040003e-02 X 11760938 11761499 562 + 0.677 0.253 -2.250
ENSG00000005302 E044 92.4550225 0.0003527138 7.558599e-03 2.266754e-02 X 11761500 11761582 83 + 2.011 1.911 -0.337
ENSG00000005302 E045 2.1265580 0.3937783642 4.498868e-01 5.910766e-01 X 11761583 11762129 547 + 0.564 0.355 -1.078
ENSG00000005302 E046 113.5049002 0.0002595357 1.300987e-01 2.343031e-01 X 11762130 11762252 123 + 2.081 2.030 -0.169
ENSG00000005302 E047 79.0346168 0.0003547339 7.693346e-02 1.545874e-01 X 11762837 11762887 51 + 1.933 1.862 -0.239
ENSG00000005302 E048 110.3623304 0.0002710941 3.668195e-02 8.487208e-02 X 11762888 11762997 110 + 2.078 2.007 -0.237
ENSG00000005302 E049 122.6059395 0.0003088500 2.334201e-01 3.664601e-01 X 11763780 11763938 159 + 2.109 2.070 -0.130
ENSG00000005302 E050 33.7825878 0.0006691940 9.857967e-03 2.841566e-02 X 11763939 11765192 1254 + 1.604 1.445 -0.545
ENSG00000005302 E051 10.6092895 0.0020438968 3.482393e-02 8.131149e-02 X 11765193 11765466 274 + 1.151 0.929 -0.810
ENSG00000005302 E052 44.3840065 0.0064525774 5.837376e-01 7.077816e-01 X 11765467 11765469 3 + 1.643 1.673 0.103
ENSG00000005302 E053 68.6929061 0.0044022423 4.573616e-01 5.976807e-01 X 11765470 11765521 52 + 1.826 1.865 0.132
ENSG00000005302 E054 55.8176149 0.0004522450 8.745609e-01 9.233423e-01 X 11765522 11765537 16 + 1.760 1.753 -0.025
ENSG00000005302 E055 74.9234504 0.0004251274 8.877259e-01 9.322295e-01 X 11765538 11765597 60 + 1.881 1.887 0.019
ENSG00000005302 E056 108.9836457 0.0014225587 1.606331e-01 2.759547e-01 X 11765598 11765729 132 + 2.018 2.069 0.171
ENSG00000005302 E057 36.0978414 0.0008209134 8.104196e-01 8.796858e-01 X 11765730 11766960 1231 + 1.577 1.562 -0.050
ENSG00000005302 E058 11.6002405 0.0628585819 2.167721e-01 3.465232e-01 X 11766961 11767046 86 + 1.016 1.188 0.621
ENSG00000005302 E059 7.2117068 0.0638316639 4.270799e-01 5.699222e-01 X 11767047 11767052 6 + 0.855 0.970 0.435
ENSG00000005302 E060 11.5703674 0.0498053950 4.539063e-01 5.946173e-01 X 11767053 11767144 92 + 1.049 1.148 0.358
ENSG00000005302 E061 8.7900331 0.0626854416 8.268548e-01 8.910824e-01 X 11767145 11767169 25 + 0.982 1.013 0.113
ENSG00000005302 E062 13.6206813 0.0887108680 7.674160e-01 8.496561e-01 X 11767170 11767286 117 + 1.135 1.210 0.268
ENSG00000005302 E063 27.8064109 0.0007834925 9.377432e-04 3.746365e-03 X 11767287 11767818 532 + 1.357 1.571 0.739
ENSG00000005302 E064 7.3954984 0.0022109122 2.112553e-02 5.386354e-02 X 11767819 11767862 44 + 0.785 1.052 1.009
ENSG00000005302 E065 17.2056113 0.0111058092 5.984095e-02 1.263450e-01 X 11767863 11768572 710 + 1.167 1.342 0.615
ENSG00000005302 E066 51.8218640 0.0011433031 4.543195e-01 5.949611e-01 X 11768573 11768574 2 + 1.707 1.744 0.126
ENSG00000005302 E067 74.3061409 0.0003854767 2.542879e-01 3.909460e-01 X 11768575 11768621 47 + 1.855 1.901 0.155
ENSG00000005302 E068 83.8188949 0.0004617893 6.672209e-01 7.745330e-01 X 11768622 11768682 61 + 1.920 1.936 0.054
ENSG00000005302 E069 6.9449460 0.0030291828 5.331629e-01 6.654054e-01 X 11768683 11769102 420 + 0.856 0.930 0.282
ENSG00000005302 E070 89.3348979 0.0003034244 4.021882e-01 5.459031e-01 X 11772156 11772255 100 + 1.943 1.974 0.104
ENSG00000005302 E071 78.6439703 0.0003702835 1.458182e-04 7.291565e-04 X 11772621 11772705 85 + 1.828 1.977 0.503
ENSG00000005302 E072 273.6718896 0.0003909399 6.929020e-35 1.689424e-32 X 11774980 11775772 793 + 2.299 2.567 0.893