ENSG00000269293

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000602810 ENSG00000269293 HEK293_DMSO_6hA HEK293_OSMI2_6hA ZSCAN16-AS1 lncRNA lncRNA 22.33009 17.18573 32.77582 1.661375 7.901157 0.9310213 1.9923345 1.9394232 2.533158 0.3298046 0.5615543 0.38357351 0.10695000 0.11920000 0.07900000 -0.040200000 0.723185802 0.001697544 FALSE FALSE
MSTRG.27872.12 ENSG00000269293 HEK293_DMSO_6hA HEK293_OSMI2_6hA ZSCAN16-AS1 lncRNA   22.33009 17.18573 32.77582 1.661375 7.901157 0.9310213 7.2081331 3.6949176 13.476881 0.7936965 3.7980448 1.86404344 0.24087917 0.20986667 0.39856667 0.188700000 0.005145339 0.001697544 TRUE FALSE
MSTRG.27872.15 ENSG00000269293 HEK293_DMSO_6hA HEK293_OSMI2_6hA ZSCAN16-AS1 lncRNA   22.33009 17.18573 32.77582 1.661375 7.901157 0.9310213 5.5893286 4.5699468 8.994254 0.6886482 2.4031889 0.97527592 0.24449583 0.26390000 0.27063333 0.006733333 0.958164253 0.001697544 TRUE FALSE
MSTRG.27872.2 ENSG00000269293 HEK293_DMSO_6hA HEK293_OSMI2_6hA ZSCAN16-AS1 lncRNA   22.33009 17.18573 32.77582 1.661375 7.901157 0.9310213 1.2064661 1.0353796 1.088075 0.2182504 0.1474582 0.07094999 0.07040417 0.05890000 0.03613333 -0.022766667 0.474343931 0.001697544 TRUE TRUE
MSTRG.27872.4 ENSG00000269293 HEK293_DMSO_6hA HEK293_OSMI2_6hA ZSCAN16-AS1 lncRNA   22.33009 17.18573 32.77582 1.661375 7.901157 0.9310213 0.9630831 0.8929411 1.056413 0.1492239 0.1370315 0.24006193 0.05887500 0.05463333 0.03530000 -0.019333333 0.732144203 0.001697544   TRUE
MSTRG.27872.9 ENSG00000269293 HEK293_DMSO_6hA HEK293_OSMI2_6hA ZSCAN16-AS1 lncRNA   22.33009 17.18573 32.77582 1.661375 7.901157 0.9310213 2.4003754 2.4933409 1.698247 0.3162858 0.3939685 -0.55133818 0.12574583 0.14733333 0.05233333 -0.095000000 0.001697544 0.001697544 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_OSMI2_6hA HEK293_DMSO_6hA log2fold_HEK293_DMSO_6hA_HEK293_OSMI2_6hA
ENSG00000269293 E001 0.8916967 0.0519140715 0.0684929090   6 28015122 28015737 616 - 0.096 0.420 2.713
ENSG00000269293 E002 0.1767706 0.0727121021 0.7425357414   6 28016360 28017201 842 - 0.096 0.000 -8.301
ENSG00000269293 E003 1.4652687 0.0114883301 0.2929348239   6 28060378 28060488 111 - 0.299 0.482 1.037
ENSG00000269293 E004 20.5857604 0.0014318805 0.0005029584 0.03618964 6 28090946 28091098 153 - 1.193 1.457 0.918
ENSG00000269293 E005 13.6312248 0.0022639904 0.0046700365 0.12269971 6 28091099 28091147 49 - 1.028 1.285 0.920
ENSG00000269293 E006 36.8617336 0.0038952410 0.0105121152 0.17747920 6 28091148 28091388 241 - 1.488 1.656 0.574
ENSG00000269293 E007 26.5687949 0.0011615139 0.0011728731 0.05931650 6 28091389 28091468 80 - 1.328 1.545 0.748
ENSG00000269293 E008 6.1594685 0.0924659449 0.1837445023 0.58404691 6 28116182 28116212 31 - 0.713 0.963 0.974
ENSG00000269293 E009 10.0056875 0.0751908459 0.0367776022 0.30308626 6 28116213 28116302 90 - 0.857 1.193 1.238
ENSG00000269293 E010 5.9850293 0.0963902912 0.1409266937 0.52661117 6 28116303 28116348 46 - 0.703 0.976 1.063
ENSG00000269293 E011 11.5458775 0.0251533552 0.0324940067 0.28908780 6 28116349 28116451 103 - 0.957 1.216 0.938
ENSG00000269293 E012 3.4390988 0.1459440305 0.9741827810 0.99394246 6 28119782 28120476 695 - 0.638 0.626 -0.049
ENSG00000269293 E013 1.8304519 0.2190492650 0.2237597070 0.62866003 6 28120477 28120512 36 - 0.521 0.260 -1.502
ENSG00000269293 E014 5.7473539 0.1875543996 0.8898586609 0.97357387 6 28120513 28120517 5 - 0.802 0.834 0.123
ENSG00000269293 E015 11.3015671 0.0169269832 0.3104627867 0.70852276 6 28120518 28120676 159 - 1.019 1.147 0.465
ENSG00000269293 E016 1.1465809 0.2819751139 0.9963160381   6 28120677 28121794 1118 - 0.337 0.347 0.061
ENSG00000269293 E017 0.0000000       6 28121795 28121797 3 -      
ENSG00000269293 E018 21.2869084 0.0494706636 0.6716893855 0.90482932 6 28121798 28122271 474 - 1.315 1.374 0.204
ENSG00000269293 E019 8.7263280 0.0252919421 0.6148025113 0.88221173 6 28122272 28122280 9 - 0.998 0.941 -0.215
ENSG00000269293 E020 26.3947436 0.0030696918 0.9099779999 0.97851141 6 28122281 28122375 95 - 1.431 1.425 -0.022
ENSG00000269293 E021 83.0562767 0.0043238606 0.8918375311 0.97406155 6 28122376 28122640 265 - 1.916 1.913 -0.010
ENSG00000269293 E022 50.0898227 0.0373343714 0.1728087206 0.57025570 6 28122641 28123018 378 - 1.647 1.770 0.417
ENSG00000269293 E023 101.5226040 0.0033764302 0.2302546564 0.63515850 6 28123019 28123083 65 - 2.024 1.970 -0.182
ENSG00000269293 E024 464.7057534 0.0008897750 0.1905804159 0.59225644 6 28123084 28123208 125 - 2.670 2.649 -0.072
ENSG00000269293 E025 281.4029278 0.0011499474 0.2487837476 0.65444900 6 28123209 28123211 3 - 2.457 2.430 -0.089
ENSG00000269293 E026 1.4959820 0.0236180410 0.2969046431   6 28125049 28125101 53 - 0.300 0.481 1.031
ENSG00000269293 E027 8.8777480 0.0345727588 0.9266103766 0.98259484 6 28125623 28125819 197 - 0.978 0.980 0.007
ENSG00000269293 E028 10.5620467 0.1056670288 0.3674812327 0.75180670 6 28136024 28136744 721 - 0.977 1.153 0.641
ENSG00000269293 E029 368.7034612 0.0001178463 0.2564196317 0.66215332 6 28136745 28136753 9 - 2.569 2.549 -0.067
ENSG00000269293 E030 455.3437501 0.0003648564 0.1588422023 0.55250924 6 28136754 28137313 560 - 2.663 2.641 -0.075