ENSG00000177728

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000314256 ENSG00000177728 HEK293_DMSO_6hA HEK293_OSMI2_6hA TMEM94 protein_coding protein_coding 37.02765 40.33897 48.73337 2.913632 2.444087 0.2726744 5.729801 4.324738 8.717215 0.6529566 2.3880172 1.0095765 0.15158333 0.1061000 0.17916667 0.07306667 0.5741301445 0.0001393581 FALSE TRUE
ENST00000577247 ENSG00000177728 HEK293_DMSO_6hA HEK293_OSMI2_6hA TMEM94 protein_coding protein_coding 37.02765 40.33897 48.73337 2.913632 2.444087 0.2726744 5.696528 5.554051 8.008280 0.8194896 1.8848822 0.5271572 0.13390000 0.1372333 0.16293333 0.02570000 0.7910922659 0.0001393581 FALSE TRUE
ENST00000581085 ENSG00000177728 HEK293_DMSO_6hA HEK293_OSMI2_6hA TMEM94 protein_coding retained_intron 37.02765 40.33897 48.73337 2.913632 2.444087 0.2726744 3.231788 4.774140 4.279520 0.2642453 0.9737124 -0.1574432 0.09343750 0.1191333 0.08720000 -0.03193333 0.5834965612 0.0001393581 FALSE TRUE
ENST00000581723 ENSG00000177728 HEK293_DMSO_6hA HEK293_OSMI2_6hA TMEM94 protein_coding retained_intron 37.02765 40.33897 48.73337 2.913632 2.444087 0.2726744 4.116911 5.843898 3.340539 0.3181136 2.0249228 -0.8050044 0.10586667 0.1469000 0.07006667 -0.07683333 0.7480888748 0.0001393581 FALSE FALSE
MSTRG.15072.2 ENSG00000177728 HEK293_DMSO_6hA HEK293_OSMI2_6hA TMEM94 protein_coding   37.02765 40.33897 48.73337 2.913632 2.444087 0.2726744 3.166800 1.628950 6.600815 0.5375460 0.3700090 2.0120559 0.08742917 0.0390000 0.13623333 0.09723333 0.0001393581 0.0001393581 FALSE TRUE
MSTRG.15072.9 ENSG00000177728 HEK293_DMSO_6hA HEK293_OSMI2_6hA TMEM94 protein_coding   37.02765 40.33897 48.73337 2.913632 2.444087 0.2726744 2.212504 2.578868 3.644284 0.9983707 0.7157952 0.4972672 0.06157917 0.0665000 0.07590000 0.00940000 0.8195139249 0.0001393581 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_OSMI2_6hA HEK293_DMSO_6hA log2fold_HEK293_DMSO_6hA_HEK293_OSMI2_6hA
ENSG00000177728 E001 0.0000000       17 75441159 75441243 85 +      
ENSG00000177728 E002 1.0042133 0.0530462887 2.747877e-01   17 75456619 75456634 16 + 0.190 0.392 1.412
ENSG00000177728 E003 1.0042133 0.0530462887 2.747877e-01   17 75456635 75456640 6 + 0.190 0.392 1.412
ENSG00000177728 E004 1.0042133 0.0530462887 2.747877e-01   17 75456641 75456645 5 + 0.190 0.392 1.412
ENSG00000177728 E005 1.1586740 0.0150201540 1.364874e-01   17 75456646 75456646 1 + 0.191 0.451 1.729
ENSG00000177728 E006 1.3304422 0.0121989077 7.167473e-02   17 75456647 75456648 2 + 0.191 0.504 1.992
ENSG00000177728 E007 1.8601910 0.0104142762 1.823881e-01 5.823047e-01 17 75456649 75456649 1 + 0.323 0.551 1.212
ENSG00000177728 E008 1.8601910 0.0104142762 1.823881e-01 5.823047e-01 17 75456650 75456652 3 + 0.323 0.551 1.212
ENSG00000177728 E009 2.0414011 0.0115009744 3.073899e-01 7.056295e-01 17 75456653 75456653 1 + 0.377 0.551 0.889
ENSG00000177728 E010 5.9756808 0.0053366947 1.415890e-01 5.273542e-01 17 75456654 75456659 6 + 0.754 0.938 0.712
ENSG00000177728 E011 71.0743243 0.0005978182 3.244210e-01 7.204046e-01 17 75456660 75456751 92 + 1.871 1.831 -0.134
ENSG00000177728 E012 3.4398553 0.0684118463 6.044631e-01 8.774099e-01 17 75457294 75457477 184 + 0.599 0.703 0.447
ENSG00000177728 E013 0.8151986 0.0173229134 9.656161e-02   17 75457478 75457685 208 + 0.105 0.391 2.409
ENSG00000177728 E014 0.5231092 0.0218759691 5.102472e-02   17 75459707 75459770 64 + 0.000 0.321 11.342
ENSG00000177728 E015 113.8803535 0.0012875532 8.172555e-01 9.536551e-01 17 75471800 75471863 64 + 2.062 2.055 -0.023
ENSG00000177728 E016 141.1619889 0.0002251042 8.371996e-01 9.594251e-01 17 75471864 75471929 66 + 2.147 2.155 0.027
ENSG00000177728 E017 0.9908042 0.0189556808 6.226984e-01   17 75471930 75471955 26 + 0.323 0.238 -0.597
ENSG00000177728 E018 0.0000000       17 75476498 75476546 49 +      
ENSG00000177728 E019 0.0000000       17 75476547 75476689 143 +      
ENSG00000177728 E020 0.0000000       17 75476690 75476743 54 +      
ENSG00000177728 E021 0.3579807 0.0285603312 2.842629e-01   17 75485396 75485427 32 + 0.191 0.000 -10.730
ENSG00000177728 E022 170.1441251 0.0002058707 4.778033e-01 8.181369e-01 17 75485428 75485547 120 + 2.240 2.223 -0.058
ENSG00000177728 E023 0.5108041 0.0235404954 4.200810e-01   17 75485548 75485780 233 + 0.106 0.238 1.403
ENSG00000177728 E024 138.5686240 0.0005919742 6.010164e-02 3.718824e-01 17 75485871 75485998 128 + 2.171 2.113 -0.194
ENSG00000177728 E025 20.2269359 0.1390713515 1.129278e-01 4.807982e-01 17 75485999 75486289 291 + 1.202 1.435 0.813
ENSG00000177728 E026 106.9989866 0.0002682976 8.791846e-01 9.709697e-01 17 75486290 75486331 42 + 2.032 2.029 -0.010
ENSG00000177728 E027 98.8338930 0.0005269216 3.039137e-01 7.029778e-01 17 75486332 75486344 13 + 1.975 2.015 0.134
ENSG00000177728 E028 168.0538964 0.0002315933 7.176281e-01 9.213047e-01 17 75486345 75486426 82 + 2.227 2.219 -0.025
ENSG00000177728 E029 2.6741855 0.0957660699 4.177996e-01 7.851322e-01 17 75487278 75487380 103 + 0.616 0.451 -0.775
ENSG00000177728 E030 218.4796663 0.0006048870 7.207406e-02 4.000799e-01 17 75487932 75488134 203 + 2.355 2.311 -0.147
ENSG00000177728 E031 153.3069429 0.0002451548 1.095192e-01 4.748506e-01 17 75488759 75488910 152 + 2.202 2.158 -0.147
ENSG00000177728 E032 149.7991556 0.0003375647 1.125122e-01 4.799924e-01 17 75489266 75489368 103 + 2.192 2.147 -0.149
ENSG00000177728 E033 144.4570615 0.0028191349 5.139928e-01 8.371328e-01 17 75489576 75489662 87 + 2.165 2.146 -0.062
ENSG00000177728 E034 3.6364614 0.2273741407 2.761562e-01 6.798737e-01 17 75489801 75489817 17 + 0.488 0.789 1.312
ENSG00000177728 E035 6.9098157 0.0054714061 6.676683e-01 9.031825e-01 17 75490058 75490233 176 + 0.866 0.919 0.201
ENSG00000177728 E036 130.4567481 0.0006341408 6.067794e-01 8.783591e-01 17 75490234 75490279 46 + 2.119 2.106 -0.045
ENSG00000177728 E037 148.8778715 0.0032858088 4.768286e-01 8.176392e-01 17 75490280 75490350 71 + 2.180 2.161 -0.064
ENSG00000177728 E038 132.9226390 0.0004354409 4.047188e-01 7.766437e-01 17 75490702 75490758 57 + 2.132 2.108 -0.078
ENSG00000177728 E039 162.0601883 0.0021676119 3.886399e-01 7.661354e-01 17 75491049 75491153 105 + 2.219 2.196 -0.077
ENSG00000177728 E040 140.2297542 0.0002399958 9.232823e-01 9.816635e-01 17 75491303 75491376 74 + 2.146 2.145 -0.002
ENSG00000177728 E041 159.7976219 0.0002134031 9.268322e-01 9.825973e-01 17 75491377 75491455 79 + 2.199 2.204 0.017
ENSG00000177728 E042 29.6029402 0.0570797187 2.378032e-01 6.430061e-01 17 75491456 75491467 12 + 1.538 1.411 -0.438
ENSG00000177728 E043 92.0791372 0.0003235059 3.069302e-01 7.052591e-01 17 75491691 75491698 8 + 1.981 1.945 -0.119
ENSG00000177728 E044 208.1979499 0.0001942149 7.318982e-01 9.263764e-01 17 75491699 75491852 154 + 2.321 2.315 -0.021
ENSG00000177728 E045 114.7468476 0.0009752617 2.124179e-01 6.170273e-01 17 75491853 75491900 48 + 2.081 2.039 -0.140
ENSG00000177728 E046 30.6349281 0.0359496523 4.258124e-03 1.169389e-01 17 75491901 75492203 303 + 1.325 1.639 1.076
ENSG00000177728 E047 9.8668727 0.0522754001 1.635206e-02 2.167115e-01 17 75492204 75492238 35 + 0.838 1.182 1.269
ENSG00000177728 E048 9.7991925 0.0191895524 7.715186e-03 1.541632e-01 17 75492239 75492275 37 + 0.851 1.172 1.182
ENSG00000177728 E049 13.4590679 0.0240028387 3.516719e-03 1.067187e-01 17 75492276 75492337 62 + 0.961 1.301 1.223
ENSG00000177728 E050 13.1058365 0.0536078820 1.999867e-01 6.034377e-01 17 75492338 75492473 136 + 1.051 1.224 0.619
ENSG00000177728 E051 173.2430730 0.0002200171 4.811949e-01 8.198814e-01 17 75492474 75492559 86 + 2.248 2.231 -0.057
ENSG00000177728 E052 256.0681275 0.0003671513 1.384426e-01 5.229967e-01 17 75492560 75492789 230 + 2.425 2.392 -0.109
ENSG00000177728 E053 22.5879679 0.1005712375 1.853303e-01 5.859292e-01 17 75492790 75492928 139 + 1.278 1.455 0.617
ENSG00000177728 E054 250.3845567 0.0024712298 6.797894e-01 9.081211e-01 17 75492929 75493102 174 + 2.391 2.406 0.049
ENSG00000177728 E055 116.2818500 0.0412568629 2.881116e-02 2.749314e-01 17 75493103 75493490 388 + 1.964 2.163 0.665
ENSG00000177728 E056 208.6949439 0.0004844118 4.492019e-01 8.031651e-01 17 75493491 75493593 103 + 2.325 2.307 -0.059
ENSG00000177728 E057 261.7150191 0.0001751503 1.974439e-02 2.343466e-01 17 75493699 75493916 218 + 2.438 2.388 -0.167
ENSG00000177728 E058 146.6482927 0.0002182476 2.674151e-02 2.658891e-01 17 75494627 75494709 83 + 2.197 2.134 -0.212
ENSG00000177728 E059 178.2164848 0.0001794680 9.469986e-01 9.875740e-01 17 75494710 75494808 99 + 2.250 2.250 0.002
ENSG00000177728 E060 0.6484328 0.0608344627 7.888443e-01   17 75494888 75494895 8 + 0.190 0.238 0.411
ENSG00000177728 E061 232.8135690 0.0001720876 1.192317e-01 4.921183e-01 17 75494896 75495034 139 + 2.349 2.387 0.127
ENSG00000177728 E062 118.2630305 0.0003849444 5.316227e-03 1.306267e-01 17 75495284 75495286 3 + 2.028 2.122 0.313
ENSG00000177728 E063 231.2791166 0.0004570099 2.285199e-02 2.494184e-01 17 75495287 75495399 113 + 2.334 2.393 0.195
ENSG00000177728 E064 1.4101293 0.3990374728 4.432738e-01   17 75495542 75495543 2 + 0.264 0.495 1.346
ENSG00000177728 E065 194.0992441 0.0013222145 5.561081e-01 8.564576e-01 17 75495544 75495643 100 + 2.275 2.297 0.072
ENSG00000177728 E066 2.9100130 0.0069872477 1.337156e-01 5.158036e-01 17 75495644 75495965 322 + 0.467 0.700 1.058
ENSG00000177728 E067 210.2321060 0.0003005873 5.152596e-01 8.378039e-01 17 75495966 75496074 109 + 2.312 2.332 0.064
ENSG00000177728 E068 11.7175709 0.0053226536 4.890388e-08 5.745526e-05 17 75496075 75496281 207 + 0.734 1.316 2.158
ENSG00000177728 E069 179.8812856 0.0019497937 9.025667e-01 9.768995e-01 17 75496282 75496333 52 + 2.252 2.260 0.026
ENSG00000177728 E070 274.2965019 0.0060142607 5.926157e-01 8.724848e-01 17 75496334 75496471 138 + 2.427 2.453 0.085
ENSG00000177728 E071 0.9746617 0.0152196812 2.517487e-01   17 75496728 75496729 2 + 0.190 0.391 1.407
ENSG00000177728 E072 163.8658494 0.0067817680 7.581119e-01 9.352570e-01 17 75496730 75496807 78 + 2.223 2.210 -0.041
ENSG00000177728 E073 172.7463680 0.0015363965 9.415545e-01 9.863948e-01 17 75497113 75497165 53 + 2.241 2.239 -0.004
ENSG00000177728 E074 133.1218428 0.0002466026 5.942063e-01 8.731961e-01 17 75497166 75497198 33 + 2.134 2.119 -0.049
ENSG00000177728 E075 115.5779690 0.0002763175 3.716474e-01 7.543985e-01 17 75497781 75497802 22 + 2.049 2.080 0.105
ENSG00000177728 E076 181.5693803 0.0009700102 5.980387e-01 8.748528e-01 17 75497803 75497862 60 + 2.267 2.252 -0.050
ENSG00000177728 E077 192.1446428 0.0003060565 9.303673e-01 9.833711e-01 17 75498175 75498216 42 + 2.285 2.289 0.013
ENSG00000177728 E078 198.0049375 0.0015263753 7.348368e-01 9.274817e-01 17 75498217 75498261 45 + 2.294 2.306 0.041
ENSG00000177728 E079 234.1000813 0.0001926990 2.135859e-01 6.181896e-01 17 75498262 75498323 62 + 2.352 2.384 0.106
ENSG00000177728 E080 150.6065047 0.0002452538 2.947833e-01 6.952202e-01 17 75498444 75498455 12 + 2.161 2.194 0.110
ENSG00000177728 E081 273.2540907 0.0001686682 7.643119e-01 9.374161e-01 17 75498456 75498538 83 + 2.432 2.441 0.030
ENSG00000177728 E082 16.2647360 0.0017200227 1.675228e-01 5.638010e-01 17 75498539 75498547 9 + 1.185 1.300 0.408
ENSG00000177728 E083 25.2617376 0.0010770732 1.049846e-01 4.667048e-01 17 75498548 75498628 81 + 1.362 1.475 0.388
ENSG00000177728 E084 289.7846439 0.0018791180 2.846315e-01 6.873427e-01 17 75498629 75498722 94 + 2.473 2.448 -0.082
ENSG00000177728 E085 16.4650720 0.0554517503 3.566990e-01 7.445112e-01 17 75498723 75498911 189 + 1.176 1.293 0.412
ENSG00000177728 E086 351.4461619 0.0001506128 1.719521e-01 5.694138e-01 17 75498912 75499082 171 + 2.555 2.532 -0.079
ENSG00000177728 E087 10.5351006 0.0078278428 9.687501e-01 9.927243e-01 17 75499083 75499118 36 + 1.051 1.050 -0.003
ENSG00000177728 E088 971.6550066 0.0014924073 7.403212e-01 9.292009e-01 17 75499262 75500452 1191 + 2.988 2.985 -0.010