• ENSG00000165152
  • 1 Isoform Switch
  • 2 Differential Exon Usage

ENSG00000165152

1 Isoform Switch

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

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isoform_idColumn filter
gene_idColumn filter
condition_1Column filter
condition_2Column filter
gene_nameColumn filter
gene_biotypeColumn filter
iso_biotypeColumn filter
gene_overall_meanColumn filter
gene_value_1Column filter
gene_value_2Column filter
gene_stderr_1Column filter
gene_stderr_2Column filter
gene_log2_fold_changeColumn filter
iso_overall_meanColumn filter
iso_value_1Column filter
iso_value_2Column filter
iso_stderr_1Column filter
iso_stderr_2Column filter
iso_log2_fold_changeColumn filter
IF_overallColumn filter
IF1Column filter
IF2Column filter
dIFColumn filter
isoform_switch_q_valueColumn filter
gene_switch_q_valueColumn filter
PTCColumn filter
codingPotentialColumn filter
ENST00000374848 ENSG00000165152 HEK293_DMSO_6hA HEK293_OSMI2_6hA PGAP4 protein_coding protein_coding 17.9856 18.01145 24.19867 1.564691 1.141948 0.4258088 6.681644 6.313487 5.860260 0.56660385 0.3648537 -0.1072961 0.3895458 0.3619000 0.2418667 -0.12003333 3.685850e-01 4.510663e-10 FALSE TRUE
MSTRG.33169.1 ENSG00000165152 HEK293_DMSO_6hA HEK293_OSMI2_6hA PGAP4 protein_coding   17.9856 18.01145 24.19867 1.564691 1.141948 0.4258088 3.284699 3.064676 2.576178 0.05295941 1.0507750 -0.2496127 0.1921583 0.1724333 0.1099667 -0.06246667 5.540821e-01 4.510663e-10 TRUE TRUE
MSTRG.33169.6 ENSG00000165152 HEK293_DMSO_6hA HEK293_OSMI2_6hA PGAP4 protein_coding   17.9856 18.01145 24.19867 1.564691 1.141948 0.4258088 6.144979 8.333649 12.700441 2.30794731 2.7983958 0.6072637 0.3136917 0.4461667 0.5168667 0.07070000 7.805391e-01 4.510663e-10 TRUE TRUE
MSTRG.33169.7 ENSG00000165152 HEK293_DMSO_6hA HEK293_OSMI2_6hA PGAP4 protein_coding   17.9856 18.01145 24.19867 1.564691 1.141948 0.4258088 1.603066 0.000000 2.794185 0.00000000 1.0029913 8.1314376 0.0883500 0.0000000 0.1197000 0.11970000 4.510663e-10 4.510663e-10 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

All exons whithin this gene region are shown and numbering below.

All exons whithin this gene region are shown and numbering below.

All exons whithin this gene region are shown and numbering below.

All isoforms whithin this gene region are shown below.

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groupIDColumn filter
featureIDColumn filter
exonBaseMeanColumn filter
dispersionColumn filter
pvalueColumn filter
padjColumn filter
seqnamesColumn filter
startColumn filter
endColumn filter
widthColumn filter
strandColumn filter
HEK293_OSMI2_6hAColumn filter
HEK293_DMSO_6hAColumn filter
log2fold_HEK293_DMSO_6hA_HEK293_OSMI2_6hAColumn filter
ENSG00000165152 E001 4.6981751 0.0054491826 0.070758930 0.39729160 9 101472119 101472140 22 - 0.611 0.857 1.009
ENSG00000165152 E002 11.0054660 0.0156881875 0.198686204 0.60177407 9 101472141 101472361 221 - 1.000 1.136 0.498
ENSG00000165152 E003 0.7974156 0.4160025738 0.070048094   9 101473170 101473170 1 - 0.000 0.414 12.024
ENSG00000165152 E004 255.7524462 0.0169072236 0.020308149 0.23749069 9 101473171 101474829 1659 - 2.338 2.466 0.426
ENSG00000165152 E005 28.6716126 0.0385077904 0.340037442 0.73191721 9 101474830 101474926 97 - 1.420 1.520 0.343
ENSG00000165152 E006 26.3336872 0.0037445785 0.127840494 0.50694746 9 101474927 101475021 95 - 1.373 1.477 0.361
ENSG00000165152 E007 136.4508041 0.0009010719 0.215104257 0.61973293 9 101475022 101475488 467 - 2.112 2.148 0.121
ENSG00000165152 E008 324.6783595 0.0008988856 0.977334342 0.99468192 9 101475489 101475796 308 - 2.508 2.506 -0.004
ENSG00000165152 E009 1056.7843853 0.0076877904 0.069847007 0.39524395 9 101475797 101477169 1373 - 3.044 3.003 -0.138
ENSG00000165152 E010 0.4688600 0.0212768442 0.604162026   9 101480671 101480725 55 - 0.208 0.123 -0.917
ENSG00000165152 E011 100.1837815 0.0003333317 0.000415793 0.03231738 9 101486949 101487205 257 - 2.060 1.935 -0.419
ENSG00000165152 E012 0.1717682 0.0327598292 0.461569838   9 101489114 101489200 87 - 0.000 0.123 9.733
ENSG00000165152 E013 0.0000000       9 101531235 101531347 113 -      
ENSG00000165152 E014 0.0000000       9 101531348 101531559 212 -      
ENSG00000165152 E015 0.0000000       9 101532677 101533448 772 -      
ENSG00000165152 E016 0.0000000       9 101533453 101533537 85 -