ENSG00000159023

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000490308 ENSG00000159023 HEK293_DMSO_6hA HEK293_OSMI2_6hA EPB41 protein_coding retained_intron 45.62901 32.63509 37.53715 4.645119 5.772333 0.2018377 8.3176134 5.2048314 5.4749454 1.3134991 0.9541050 0.07285663 0.15579583 0.15500000 0.1541667 -0.0008333333 9.877233e-01 4.586427e-25 FALSE TRUE
ENST00000647103 ENSG00000159023 HEK293_DMSO_6hA HEK293_OSMI2_6hA EPB41 protein_coding protein_coding 45.62901 32.63509 37.53715 4.645119 5.772333 0.2018377 7.8899309 5.5988303 6.3894870 0.2616988 1.4543428 0.19025633 0.16403750 0.18000000 0.1660667 -0.0139333333 9.240396e-01 4.586427e-25 FALSE TRUE
MSTRG.706.24 ENSG00000159023 HEK293_DMSO_6hA HEK293_OSMI2_6hA EPB41 protein_coding   45.62901 32.63509 37.53715 4.645119 5.772333 0.2018377 10.8678833 11.2432026 11.9524987 1.6528495 2.7633156 0.08818311 0.26279167 0.34586667 0.3111000 -0.0347666667 7.492045e-01 4.586427e-25 FALSE TRUE
MSTRG.706.26 ENSG00000159023 HEK293_DMSO_6hA HEK293_OSMI2_6hA EPB41 protein_coding   45.62901 32.63509 37.53715 4.645119 5.772333 0.2018377 0.8871524 0.6309424 3.8307062 0.6309424 1.3709050 2.58310493 0.02580000 0.02033333 0.1024667 0.0821333333 2.057954e-01 4.586427e-25 FALSE TRUE
MSTRG.706.3 ENSG00000159023 HEK293_DMSO_6hA HEK293_OSMI2_6hA EPB41 protein_coding   45.62901 32.63509 37.53715 4.645119 5.772333 0.2018377 0.9504930 2.9227691 0.0000000 0.6949033 0.0000000 -8.19611966 0.03424583 0.08793333 0.0000000 -0.0879333333 4.586427e-25 4.586427e-25 FALSE TRUE
MSTRG.706.38 ENSG00000159023 HEK293_DMSO_6hA HEK293_OSMI2_6hA EPB41 protein_coding   45.62901 32.63509 37.53715 4.645119 5.772333 0.2018377 2.2531221 0.0000000 2.1055177 0.0000000 0.9652798 7.72486697 0.04424583 0.00000000 0.0591000 0.0591000000 1.217635e-06 4.586427e-25 FALSE TRUE
MSTRG.706.40 ENSG00000159023 HEK293_DMSO_6hA HEK293_OSMI2_6hA EPB41 protein_coding   45.62901 32.63509 37.53715 4.645119 5.772333 0.2018377 5.5122253 0.0000000 0.6201653 0.0000000 0.6201653 5.97765839 0.09231250 0.00000000 0.0157000 0.0157000000 7.521776e-01 4.586427e-25 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_OSMI2_6hA HEK293_DMSO_6hA log2fold_HEK293_DMSO_6hA_HEK293_OSMI2_6hA
ENSG00000159023 E001 0.0000000       1 28886996 28887026 31 +      
ENSG00000159023 E002 0.0000000       1 28887027 28887072 46 +      
ENSG00000159023 E003 0.3794938 6.046056e-02 0.6222372832   1 28887073 28887090 18 + 0.204 0.124 -0.859
ENSG00000159023 E004 0.4920104 2.859059e-01 0.5015863383   1 28887091 28887091 1 + 0.269 0.124 -1.383
ENSG00000159023 E005 1.1370781 2.112901e-02 0.5586234004   1 28887092 28887097 6 + 0.399 0.300 -0.600
ENSG00000159023 E006 1.4213628 7.529865e-02 0.7026084448   1 28887098 28887099 2 + 0.443 0.367 -0.421
ENSG00000159023 E007 1.5931310 1.121744e-01 0.9682104080   1 28887100 28887102 3 + 0.441 0.425 -0.083
ENSG00000159023 E008 1.5931310 1.121744e-01 0.9682104080   1 28887103 28887108 6 + 0.441 0.425 -0.083
ENSG00000159023 E009 2.3486025 5.839553e-02 0.5218060789 0.84098299 1 28887109 28887111 3 + 0.487 0.599 0.522
ENSG00000159023 E010 3.2672870 1.137801e-02 0.8044437662 0.94964302 1 28887112 28887116 5 + 0.665 0.635 -0.129
ENSG00000159023 E011 4.2874091 2.583368e-02 0.7798770738 0.94224631 1 28887117 28887118 2 + 0.762 0.724 -0.153
ENSG00000159023 E012 6.7730382 4.654484e-02 0.5550372293 0.85602950 1 28887119 28887123 5 + 0.951 0.862 -0.339
ENSG00000159023 E013 17.1634711 2.044149e-02 0.6790611686 0.90770338 1 28887124 28887171 48 + 1.289 1.251 -0.130
ENSG00000159023 E014 23.6487910 1.433813e-02 0.8182440353 0.95398714 1 28887172 28887210 39 + 1.407 1.394 -0.043
ENSG00000159023 E015 1.7328089 9.094038e-02 0.8779241453 0.97073781 1 28893371 28893740 370 + 0.449 0.425 -0.122
ENSG00000159023 E016 0.7065194 1.128368e-01 0.3575174010   1 28893741 28893837 97 + 0.285 0.124 -1.487
ENSG00000159023 E017 0.1812101 3.338299e-02 0.5125013425   1 28914528 28914543 16 + 0.115 0.000 -12.730
ENSG00000159023 E018 0.3624201 3.502145e-01 0.3011053517   1 28914544 28914550 7 + 0.213 0.000 -12.910
ENSG00000159023 E019 1.3917423 4.582875e-01 0.4052150379   1 28914551 28914561 11 + 0.480 0.217 -1.633
ENSG00000159023 E020 1.3917423 4.582875e-01 0.4052150379   1 28914562 28914566 5 + 0.480 0.217 -1.633
ENSG00000159023 E021 1.3917423 4.582875e-01 0.4052150379   1 28914567 28914568 2 + 0.480 0.217 -1.633
ENSG00000159023 E022 1.3917423 4.582875e-01 0.4052150379   1 28914569 28914571 3 + 0.480 0.217 -1.633
ENSG00000159023 E023 1.3917423 4.582875e-01 0.4052150379   1 28914572 28914573 2 + 0.480 0.217 -1.633
ENSG00000159023 E024 1.8622395 2.027773e-01 0.1059201283 0.46821496 1 28914574 28914578 5 + 0.591 0.219 -2.145
ENSG00000159023 E025 14.6971324 3.887279e-03 0.0677483966 0.39071865 1 28914579 28914600 22 + 1.275 1.122 -0.543
ENSG00000159023 E026 18.3905849 4.807617e-03 0.0097633385 0.17174643 1 28914601 28914625 25 + 1.390 1.183 -0.726
ENSG00000159023 E027 58.0458993 6.009917e-04 0.0004833073 0.03532791 1 28914626 28914768 143 + 1.842 1.691 -0.512
ENSG00000159023 E028 0.2842848 2.628041e-02 0.9621412691   1 28914769 28914773 5 + 0.115 0.124 0.132
ENSG00000159023 E029 42.3931169 9.353801e-04 0.1962919271 0.59946334 1 28987431 28987447 17 + 1.662 1.603 -0.201
ENSG00000159023 E030 103.3151045 1.114966e-03 0.6727155338 0.90504273 1 28987448 28987497 50 + 2.022 2.018 -0.015
ENSG00000159023 E031 90.6705896 8.392682e-04 0.9742449958 0.99394246 1 28987498 28987510 13 + 1.960 1.970 0.032
ENSG00000159023 E032 180.0548030 5.287787e-03 0.5865900389 0.86982363 1 28987511 28987610 100 + 2.264 2.255 -0.031
ENSG00000159023 E033 339.9346874 1.327227e-03 0.5564289917 0.85657797 1 28987611 28987905 295 + 2.534 2.531 -0.011
ENSG00000159023 E034 1.8613527 1.241466e-02 0.3261034425 0.72162645 1 28988763 28988829 67 + 0.346 0.521 0.929
ENSG00000159023 E035 0.0000000       1 28989356 28989435 80 +      
ENSG00000159023 E036 229.2130170 4.589450e-04 0.4141179542 0.78289896 1 28993330 28993542 213 + 2.366 2.356 -0.034
ENSG00000159023 E037 160.4279152 2.402856e-04 0.0257906910 0.26137543 1 28997215 28997319 105 + 2.232 2.180 -0.174
ENSG00000159023 E038 99.6841262 3.356225e-04 0.0071066769 0.14838272 1 29011865 29011907 43 + 2.041 1.956 -0.285
ENSG00000159023 E039 128.5537531 1.093298e-03 0.0061258702 0.13890419 1 29015692 29015767 76 + 2.150 2.065 -0.284
ENSG00000159023 E040 187.9974573 1.854460e-04 0.0538649120 0.35541594 1 29018224 29018358 135 + 2.296 2.257 -0.130
ENSG00000159023 E041 173.9586045 1.133726e-03 0.2736300733 0.67743822 1 29018359 29018442 84 + 2.257 2.234 -0.077
ENSG00000159023 E042 161.8303319 1.897163e-03 0.1863875029 0.58716818 1 29030400 29030487 88 + 2.232 2.197 -0.117
ENSG00000159023 E043 0.1544607 3.248640e-02 0.4645369883   1 29031788 29031913 126 + 0.000 0.124 12.214
ENSG00000159023 E044 214.4682948 7.961427e-03 0.9153065182 0.97981348 1 29033093 29033245 153 + 2.329 2.342 0.043
ENSG00000159023 E045 0.3513410 2.541317e-02 0.1849837559   1 29035006 29035283 278 + 0.000 0.221 13.309
ENSG00000159023 E046 192.1920170 3.647833e-03 0.6523364504 0.89741022 1 29035826 29035923 98 + 2.274 2.301 0.088
ENSG00000159023 E047 246.3560234 2.455055e-03 0.6460202849 0.89480157 1 29039254 29039417 164 + 2.398 2.391 -0.025
ENSG00000159023 E048 99.4668107 8.632709e-04 0.0703513930 0.39643143 1 29039418 29039426 9 + 2.029 1.970 -0.196
ENSG00000159023 E049 76.5271605 3.807740e-03 0.0790935813 0.41568406 1 29053104 29053106 3 + 1.929 1.847 -0.277
ENSG00000159023 E050 161.3217330 2.680762e-04 0.0922308424 0.44258892 1 29053107 29053163 57 + 2.229 2.191 -0.125
ENSG00000159023 E051 264.4488811 1.647251e-04 0.9300620390 0.98336984 1 29053164 29053312 149 + 2.421 2.429 0.028
ENSG00000159023 E052 6.1527813 4.389846e-01 0.2154466186 0.62005799 1 29053313 29054514 1202 + 0.625 0.999 1.479
ENSG00000159023 E053 19.6388098 2.926104e-03 0.3635839507 0.74938416 1 29058589 29058603 15 + 1.352 1.291 -0.212
ENSG00000159023 E054 25.1598637 4.864172e-03 0.1105987595 0.47672289 1 29058604 29058645 42 + 1.477 1.366 -0.383
ENSG00000159023 E055 4.4710504 2.741546e-02 0.8058456242 0.94996251 1 29058811 29058852 42 + 0.746 0.724 -0.091
ENSG00000159023 E056 162.3158124 2.055777e-04 0.4332959089 0.79366931 1 29060422 29060484 63 + 2.196 2.228 0.107
ENSG00000159023 E057 2.0630626 9.946643e-03 0.1384518208 0.52299668 1 29064957 29064981 25 + 0.345 0.600 1.298
ENSG00000159023 E058 350.1609154 1.307618e-04 0.7436241429 0.93056797 1 29064982 29065158 177 + 2.544 2.548 0.014
ENSG00000159023 E059 0.6524577 2.009658e-02 0.0330245218   1 29065159 29065683 525 + 0.000 0.366 14.391
ENSG00000159023 E060 0.1544607 3.248640e-02 0.4645369883   1 29065684 29065825 142 + 0.000 0.124 12.214
ENSG00000159023 E061 0.1544607 3.248640e-02 0.4645369883   1 29065826 29065950 125 + 0.000 0.124 12.214
ENSG00000159023 E062 2.1077480 1.672426e-02 0.0430515331 0.32377355 1 29068733 29068768 36 + 0.281 0.634 1.862
ENSG00000159023 E063 1.6690025 1.289419e-01 0.1017522942 0.46060814 1 29068769 29068783 15 + 0.209 0.560 2.094
ENSG00000159023 E064 0.6825723 1.853230e-02 0.2868023255   1 29069166 29070363 1198 + 0.115 0.300 1.711
ENSG00000159023 E065 0.0000000       1 29070364 29070385 22 +      
ENSG00000159023 E066 0.0000000       1 29070386 29070390 5 +      
ENSG00000159023 E067 1.6991781 1.281122e-02 0.0440183727 0.32651032 1 29070391 29073093 2703 + 0.206 0.562 2.126
ENSG00000159023 E068 0.5512620 2.265748e-02 0.9452196217   1 29079441 29081664 2224 + 0.205 0.221 0.133
ENSG00000159023 E069 0.1717682 3.326112e-02 0.4635034847   1 29082466 29082757 292 + 0.000 0.124 12.206
ENSG00000159023 E070 0.1717682 3.326112e-02 0.4635034847   1 29083897 29083994 98 + 0.000 0.124 12.206
ENSG00000159023 E071 0.2937266 2.744240e-02 0.2187472600   1 29083995 29084122 128 + 0.206 0.000 -13.811
ENSG00000159023 E072 8.9627932 9.360068e-02 0.7576185752 0.93507583 1 29096155 29096231 77 + 1.014 0.955 -0.221
ENSG00000159023 E073 17.9445069 1.584477e-03 0.6783173603 0.90744619 1 29096232 29096604 373 + 1.248 1.291 0.152
ENSG00000159023 E074 3.7202933 2.259695e-01 0.6576486422 0.89982164 1 29096605 29097586 982 + 0.585 0.743 0.674
ENSG00000159023 E075 1.8300373 2.223821e-01 0.5445717451 0.85195181 1 29097587 29097806 220 + 0.508 0.365 -0.756
ENSG00000159023 E076 326.2071383 1.410893e-04 0.3671456683 0.75156691 1 29097807 29097935 129 + 2.499 2.527 0.095
ENSG00000159023 E077 308.9017071 5.651812e-04 0.4558465126 0.80658904 1 29109336 29109437 102 + 2.491 2.485 -0.022
ENSG00000159023 E078 0.5152436 2.124371e-02 0.5335242473   1 29109438 29109738 301 + 0.115 0.221 1.126
ENSG00000159023 E079 281.9845935 1.930592e-04 0.7781129305 0.94179576 1 29112368 29112448 81 + 2.447 2.452 0.014
ENSG00000159023 E080 31.7486171 1.580868e-01 0.0351635983 0.29787260 1 29112449 29114611 2163 + 1.287 1.658 1.276
ENSG00000159023 E081 293.6844290 4.226537e-04 0.8584687297 0.96527199 1 29115699 29115803 105 + 2.464 2.471 0.023
ENSG00000159023 E082 492.5480489 8.637711e-05 0.3294668663 0.72403085 1 29116819 29117146 328 + 2.679 2.705 0.086
ENSG00000159023 E083 1045.1978936 2.407267e-04 0.0368054541 0.30313730 1 29117147 29117866 720 + 3.001 3.036 0.116
ENSG00000159023 E084 2681.7878971 1.711549e-03 0.0859543341 0.42987596 1 29117867 29121223 3357 + 3.412 3.444 0.107