ENSG00000148396

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000277537 ENSG00000148396 HEK293_DMSO_6hA HEK293_OSMI2_6hA SEC16A protein_coding protein_coding 41.95945 43.09017 60.13704 3.215914 7.302256 0.4808003 3.540060 5.939715 7.9678281 0.9535998 1.3385660 0.42317551 0.06266667 0.13630000 0.13110000 -0.00520000 0.95030899 7.979762e-15 FALSE TRUE
ENST00000313050 ENSG00000148396 HEK293_DMSO_6hA HEK293_OSMI2_6hA SEC16A protein_coding protein_coding 41.95945 43.09017 60.13704 3.215914 7.302256 0.4808003 8.272928 7.046212 10.8514277 0.6738851 0.4388178 0.62224796 0.24711250 0.16370000 0.18460000 0.02090000 0.75110148 7.979762e-15 FALSE TRUE
ENST00000371706 ENSG00000148396 HEK293_DMSO_6hA HEK293_OSMI2_6hA SEC16A protein_coding protein_coding 41.95945 43.09017 60.13704 3.215914 7.302256 0.4808003 3.196350 2.717456 5.1846949 0.1695865 1.3665385 0.92948288 0.07552083 0.06320000 0.08356667 0.02036667 0.68975904 7.979762e-15 FALSE TRUE
ENST00000453963 ENSG00000148396 HEK293_DMSO_6hA HEK293_OSMI2_6hA SEC16A protein_coding protein_coding 41.95945 43.09017 60.13704 3.215914 7.302256 0.4808003 3.689181 3.022417 6.5139601 0.8445922 0.7434864 1.10527982 0.07740833 0.07116667 0.10853333 0.03736667 0.47351373 7.979762e-15 FALSE TRUE
ENST00000467838 ENSG00000148396 HEK293_DMSO_6hA HEK293_OSMI2_6hA SEC16A protein_coding processed_transcript 41.95945 43.09017 60.13704 3.215914 7.302256 0.4808003 12.034281 13.763797 14.4112977 0.6957723 2.0541469 0.06627471 0.23012500 0.32080000 0.23866667 -0.08213333 0.04447758 7.979762e-15   FALSE
MSTRG.33642.1 ENSG00000148396 HEK293_DMSO_6hA HEK293_OSMI2_6hA SEC16A protein_coding   41.95945 43.09017 60.13704 3.215914 7.302256 0.4808003 2.541705 1.545902 6.0757230 0.8134334 1.3294808 1.96767761 0.06072917 0.03743333 0.09940000 0.06196667 0.73492726 7.979762e-15 FALSE TRUE
MSTRG.33642.24 ENSG00000148396 HEK293_DMSO_6hA HEK293_OSMI2_6hA SEC16A protein_coding   41.95945 43.09017 60.13704 3.215914 7.302256 0.4808003 1.466286 1.419173 0.8951146 1.0711958 0.4482630 -0.65900832 0.05147500 0.03070000 0.01673333 -0.01396667 0.85342115 7.979762e-15 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_OSMI2_6hA HEK293_DMSO_6hA log2fold_HEK293_DMSO_6hA_HEK293_OSMI2_6hA
ENSG00000148396 E001 0.4654948 2.134740e-02 7.868934e-01   9 136440096 136440096 1 - 0.185 0.139 -0.495
ENSG00000148396 E002 1.1560228 9.438079e-02 3.970805e-01   9 136440097 136440100 4 - 0.410 0.245 -1.055
ENSG00000148396 E003 1.9685093 3.086361e-01 1.737296e-01 0.57134123 9 136440101 136440102 2 - 0.604 0.245 -1.995
ENSG00000148396 E004 5.2933497 1.253148e-01 8.967449e-01 0.97544115 9 136440103 136440104 2 - 0.835 0.770 -0.258
ENSG00000148396 E005 10.1315869 2.948988e-02 5.923042e-01 0.87235892 9 136440105 136440111 7 - 1.081 1.003 -0.287
ENSG00000148396 E006 19.9306515 5.798106e-03 2.518182e-01 0.65764198 9 136440112 136440119 8 - 1.362 1.264 -0.340
ENSG00000148396 E007 22.6271251 4.523669e-03 2.909491e-01 0.69231588 9 136440120 136440137 18 - 1.405 1.323 -0.287
ENSG00000148396 E008 31.4142156 8.730025e-03 2.867342e-01 0.68890286 9 136440138 136440144 7 - 1.548 1.462 -0.293
ENSG00000148396 E009 46.3360620 1.948073e-02 9.045702e-01 0.97737914 9 136440145 136440146 2 - 1.674 1.674 0.002
ENSG00000148396 E010 82.0012599 1.583140e-02 9.408967e-01 0.98615409 9 136440147 136440159 13 - 1.919 1.912 -0.025
ENSG00000148396 E011 185.3266429 1.745084e-02 6.048612e-01 0.87754434 9 136440160 136440205 46 - 2.252 2.287 0.117
ENSG00000148396 E012 402.7369854 7.340069e-03 4.330710e-01 0.79360781 9 136440206 136440309 104 - 2.586 2.624 0.126
ENSG00000148396 E013 394.5799455 7.307954e-03 3.796408e-01 0.75994549 9 136440310 136440357 48 - 2.575 2.617 0.141
ENSG00000148396 E014 600.9407871 5.706652e-03 3.572933e-01 0.74499277 9 136440358 136440499 142 - 2.760 2.796 0.122
ENSG00000148396 E015 1821.2065320 2.331481e-04 8.500404e-05 0.01234166 9 136440500 136441391 892 - 3.236 3.279 0.143
ENSG00000148396 E016 477.1571081 8.719304e-05 9.393835e-05 0.01308103 9 136441392 136441597 206 - 2.645 2.710 0.215
ENSG00000148396 E017 111.1181602 3.057855e-04 1.192275e-01 0.49211827 9 136441598 136441600 3 - 2.020 2.073 0.178
ENSG00000148396 E018 165.2477247 3.661618e-04 1.917014e-01 0.59379397 9 136441601 136441619 19 - 2.201 2.239 0.125
ENSG00000148396 E019 232.4208737 2.751798e-04 3.031105e-01 0.70247465 9 136441620 136441678 59 - 2.354 2.380 0.085
ENSG00000148396 E020 248.0996692 9.628887e-04 8.696690e-01 0.96804995 9 136441679 136441754 76 - 2.390 2.397 0.021
ENSG00000148396 E021 233.3770857 3.224473e-04 3.176763e-01 0.71483897 9 136441755 136441823 69 - 2.377 2.354 -0.079
ENSG00000148396 E022 243.6947734 9.593175e-04 2.988068e-01 0.69899877 9 136443823 136443900 78 - 2.395 2.369 -0.086
ENSG00000148396 E023 24.0350548 9.706632e-02 1.899321e-02 0.23070996 9 136443901 136444082 182 - 1.199 1.556 1.238
ENSG00000148396 E024 131.7944053 2.166564e-04 4.819577e-01 0.82037913 9 136445052 136445111 60 - 2.128 2.107 -0.072
ENSG00000148396 E025 202.8618262 1.962068e-04 2.967129e-01 0.69702285 9 136445645 136445719 75 - 2.313 2.288 -0.085
ENSG00000148396 E026 298.5084734 4.460587e-04 9.540125e-02 0.44897051 9 136446855 136446949 95 - 2.485 2.449 -0.120
ENSG00000148396 E027 81.2979779 2.028380e-03 7.025608e-01 0.91604009 9 136446950 136447006 57 - 1.900 1.919 0.066
ENSG00000148396 E028 44.8817510 6.349462e-04 6.499657e-01 0.89639262 9 136447007 136447015 9 - 1.645 1.669 0.083
ENSG00000148396 E029 3.1728720 1.877221e-01 2.956848e-01 0.69613731 9 136447016 136447039 24 - 0.510 0.710 0.885
ENSG00000148396 E030 311.1520793 6.318425e-04 3.859461e-01 0.76446421 9 136447227 136447361 135 - 2.478 2.501 0.076
ENSG00000148396 E031 114.2284997 2.646318e-04 1.953112e-01 0.59824425 9 136447362 136447364 3 - 2.036 2.080 0.147
ENSG00000148396 E032 241.8409661 3.378931e-04 4.483678e-01 0.80275500 9 136447569 136447680 112 - 2.373 2.392 0.065
ENSG00000148396 E033 200.9463348 1.544561e-04 4.579584e-01 0.80750247 9 136447853 136447909 57 - 2.292 2.312 0.064
ENSG00000148396 E034 4.3068193 4.766965e-01 7.423095e-02 0.40472769 9 136448009 136448083 75 - 0.486 0.896 1.737
ENSG00000148396 E035 230.9239138 2.386361e-04 9.141097e-01 0.97942057 9 136448084 136448161 78 - 2.361 2.359 -0.007
ENSG00000148396 E036 1.5687255 6.106594e-01 4.485961e-01   9 136448250 136448620 371 - 0.270 0.519 1.420
ENSG00000148396 E037 0.8782876 2.003608e-01 8.887471e-01   9 136448621 136448842 222 - 0.262 0.245 -0.128
ENSG00000148396 E038 2.2006914 8.871786e-03 8.989218e-02 0.43840288 9 136450818 136450881 64 - 0.367 0.643 1.354
ENSG00000148396 E039 285.8999180 1.039900e-03 4.229102e-01 0.78781429 9 136451256 136451408 153 - 2.461 2.442 -0.062
ENSG00000148396 E040 6.7249993 1.747857e-01 1.021172e-01 0.46120883 9 136451409 136452346 938 - 0.721 1.018 1.147
ENSG00000148396 E041 211.3915429 2.964278e-03 9.040197e-01 0.97723922 9 136453428 136453510 83 - 2.321 2.324 0.011
ENSG00000148396 E042 340.1156112 5.277666e-03 7.560870e-01 0.93459584 9 136454109 136454327 219 - 2.531 2.529 -0.006
ENSG00000148396 E043 348.7813159 2.263567e-03 2.093921e-01 0.61355103 9 136455601 136455793 193 - 2.554 2.523 -0.103
ENSG00000148396 E044 322.2536501 2.096159e-03 7.793458e-01 0.94213194 9 136456053 136456166 114 - 2.505 2.505 -0.001
ENSG00000148396 E045 321.7560768 3.045069e-04 3.434959e-01 0.73461561 9 136457444 136457584 141 - 2.510 2.492 -0.060
ENSG00000148396 E046 297.3723036 1.560284e-03 4.215156e-01 0.78702979 9 136459134 136459239 106 - 2.478 2.458 -0.067
ENSG00000148396 E047 311.2106857 1.990624e-03 2.071333e-01 0.61094820 9 136459444 136459555 112 - 2.506 2.470 -0.121
ENSG00000148396 E048 331.6165876 1.933215e-04 8.619866e-01 0.96635551 9 136459757 136459874 118 - 2.517 2.514 -0.009
ENSG00000148396 E049 276.2682650 1.521973e-04 4.896758e-01 0.82442411 9 136460042 136460123 82 - 2.431 2.447 0.053
ENSG00000148396 E050 277.9133795 2.846750e-04 5.951002e-02 0.37030626 9 136461177 136461274 98 - 2.458 2.417 -0.138
ENSG00000148396 E051 184.8285286 1.894015e-04 1.394033e-03 0.06549176 9 136462887 136462942 56 - 2.300 2.215 -0.284
ENSG00000148396 E052 176.1899933 2.518245e-04 3.042406e-03 0.09918434 9 136462943 136462993 51 - 2.278 2.197 -0.272
ENSG00000148396 E053 295.7622910 5.931564e-04 6.599640e-01 0.90060412 9 136462994 136463132 139 - 2.472 2.462 -0.034
ENSG00000148396 E054 230.7816868 2.147494e-04 9.482670e-01 0.98782902 9 136463463 136463585 123 - 2.359 2.358 -0.002
ENSG00000148396 E055 110.7039561 5.588562e-03 4.265504e-01 0.79012238 9 136463586 136463601 16 - 2.064 2.022 -0.140
ENSG00000148396 E056 14.1465531 2.942059e-02 8.757078e-02 0.43332378 9 136463602 136463678 77 - 1.078 1.273 0.692
ENSG00000148396 E057 171.4917260 1.904167e-04 2.743781e-01 0.67818555 9 136463679 136463740 62 - 2.246 2.216 -0.099
ENSG00000148396 E058 203.6143147 1.930484e-04 6.698919e-01 0.90410190 9 136464420 136464526 107 - 2.310 2.300 -0.034
ENSG00000148396 E059 131.7396249 5.251189e-04 5.858271e-01 0.86938877 9 136464527 136464562 36 - 2.123 2.107 -0.055
ENSG00000148396 E060 236.3825147 2.330040e-04 3.203924e-01 0.71680610 9 136465962 136466136 175 - 2.382 2.359 -0.077
ENSG00000148396 E061 169.2048207 3.227116e-03 2.502405e-01 0.65606288 9 136466264 136466384 121 - 2.248 2.205 -0.142
ENSG00000148396 E062 161.6717153 3.088763e-03 8.512221e-01 0.96324542 9 136466385 136466462 78 - 2.204 2.214 0.034
ENSG00000148396 E063 227.7750996 8.324808e-04 7.769247e-01 0.94132809 9 136466957 136467083 127 - 2.359 2.353 -0.019
ENSG00000148396 E064 198.5901315 1.700082e-04 3.346736e-01 0.72811629 9 136468415 136468512 98 - 2.284 2.309 0.084
ENSG00000148396 E065 237.7710465 1.668684e-04 3.875092e-01 0.76547925 9 136471975 136472111 137 - 2.382 2.362 -0.065
ENSG00000148396 E066 442.7402070 3.074572e-03 3.078127e-01 0.70611095 9 136474049 136474486 438 - 2.654 2.629 -0.085
ENSG00000148396 E067 67.6683822 4.993895e-03 8.390783e-01 0.95991242 9 136474487 136474489 3 - 1.834 1.828 -0.022
ENSG00000148396 E068 510.3075086 2.491424e-03 6.672976e-01 0.90311683 9 136474490 136475197 708 - 2.709 2.700 -0.027
ENSG00000148396 E069 528.1610924 1.281709e-04 1.163598e-01 0.48694413 9 136475198 136475937 740 - 2.730 2.706 -0.082
ENSG00000148396 E070 695.7882143 1.306596e-03 1.890492e-01 0.59043223 9 136475938 136477115 1178 - 2.851 2.825 -0.088
ENSG00000148396 E071 380.4356282 4.564502e-03 8.006417e-01 0.94844170 9 136477116 136477684 569 - 2.571 2.585 0.050
ENSG00000148396 E072 0.2842848 2.684832e-02 7.981815e-01   9 136477685 136477689 5 - 0.102 0.139 0.508
ENSG00000148396 E073 6.3487688 3.831256e-03 4.462212e-02 0.32879570 9 136478709 136478830 122 - 0.742 0.986 0.942
ENSG00000148396 E074 74.3868586 6.317828e-03 8.222310e-01 0.95500315 9 136482938 136483112 175 - 1.869 1.883 0.045
ENSG00000148396 E075 19.7168356 4.049421e-02 3.788920e-01 0.75929392 9 136483510 136483698 189 - 1.352 1.238 -0.397
ENSG00000148396 E076 11.3654792 3.322974e-02 7.247393e-01 0.92390594 9 136483699 136484000 302 - 1.096 1.050 -0.168