ENSG00000140983

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000315082 ENSG00000140983 HEK293_DMSO_6hA HEK293_OSMI2_6hA RHOT2 protein_coding protein_coding 123.1078 140.5064 162.3164 2.657681 14.64653 0.2081595 34.66860 28.79642 55.06440 3.5566693 10.210521 0.9349915 0.26180833 0.2041333 0.33870000 0.134566667 0.20452403 5.117013e-21 FALSE TRUE
ENST00000564659 ENSG00000140983 HEK293_DMSO_6hA HEK293_OSMI2_6hA RHOT2 protein_coding retained_intron 123.1078 140.5064 162.3164 2.657681 14.64653 0.2081595 24.55693 30.45622 26.54771 1.2038123 3.371447 -0.1980797 0.19078750 0.2167333 0.16250000 -0.054233333 0.01717738 5.117013e-21 FALSE FALSE
MSTRG.11740.6 ENSG00000140983 HEK293_DMSO_6hA HEK293_OSMI2_6hA RHOT2 protein_coding   123.1078 140.5064 162.3164 2.657681 14.64653 0.2081595 10.13160 11.99076 13.40080 0.7204679 2.986951 0.1602692 0.08731667 0.0852000 0.08193333 -0.003266667 0.90853434 5.117013e-21 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_OSMI2_6hA HEK293_DMSO_6hA log2fold_HEK293_DMSO_6hA_HEK293_OSMI2_6hA
ENSG00000140983 E001 3.061109 7.308683e-03 1.299094e-01 0.510146400 16 668105 668105 1 + 0.476 0.719 1.087
ENSG00000140983 E002 3.253488 6.292429e-03 2.015295e-01 0.605139794 16 668106 668111 6 + 0.516 0.719 0.894
ENSG00000140983 E003 8.151136 3.209266e-03 7.788396e-01 0.942014288 16 668112 668122 11 + 0.979 0.960 -0.070
ENSG00000140983 E004 13.739569 2.010051e-03 3.632217e-01 0.749163493 16 668123 668123 1 + 1.206 1.137 -0.247
ENSG00000140983 E005 19.162741 1.168629e-02 5.440897e-01 0.851720273 16 668124 668131 8 + 1.334 1.286 -0.167
ENSG00000140983 E006 22.014389 4.294056e-03 2.390278e-01 0.644283282 16 668132 668134 3 + 1.405 1.324 -0.279
ENSG00000140983 E007 100.398208 5.119053e-03 1.050566e-01 0.466869661 16 668135 668150 16 + 2.038 1.971 -0.226
ENSG00000140983 E008 115.112801 8.144697e-03 2.563499e-01 0.662149937 16 668151 668152 2 + 2.090 2.039 -0.170
ENSG00000140983 E009 122.037064 8.018594e-03 1.926448e-01 0.594658903 16 668153 668154 2 + 2.118 2.059 -0.196
ENSG00000140983 E010 139.248975 2.715742e-03 1.350147e-02 0.200141498 16 668155 668161 7 + 2.184 2.102 -0.273
ENSG00000140983 E011 206.236202 2.453447e-04 7.826761e-05 0.011783123 16 668162 668177 16 + 2.354 2.268 -0.287
ENSG00000140983 E012 211.134943 1.057643e-03 2.682620e-04 0.024571147 16 668178 668179 2 + 2.366 2.276 -0.301
ENSG00000140983 E013 222.758811 1.105096e-03 9.488096e-05 0.013150089 16 668180 668181 2 + 2.392 2.295 -0.321
ENSG00000140983 E014 247.210853 6.560680e-04 8.523145e-05 0.012345820 16 668182 668186 5 + 2.432 2.347 -0.283
ENSG00000140983 E015 294.610409 9.832722e-04 2.681239e-05 0.005877056 16 668187 668208 22 + 2.511 2.419 -0.306
ENSG00000140983 E016 320.342255 9.964285e-04 1.738494e-05 0.004473357 16 668209 668236 28 + 2.546 2.455 -0.303
ENSG00000140983 E017 28.238726 3.366073e-02 5.027594e-01 0.831156716 16 668237 668352 116 + 1.430 1.497 0.233
ENSG00000140983 E018 240.924825 1.746083e-04 1.067320e-04 0.014025734 16 668353 668357 5 + 2.416 2.340 -0.253
ENSG00000140983 E019 463.586212 3.394747e-04 1.873907e-03 0.077124638 16 668358 668411 54 + 2.687 2.644 -0.143
ENSG00000140983 E020 41.515518 5.840673e-02 6.103325e-02 0.374223489 16 668412 668487 76 + 1.511 1.726 0.732
ENSG00000140983 E021 565.568502 9.992847e-05 1.051513e-02 0.177511445 16 668488 668559 72 + 2.762 2.737 -0.082
ENSG00000140983 E022 427.677527 2.315451e-04 1.387943e-01 0.523500473 16 668560 668569 10 + 2.634 2.622 -0.040
ENSG00000140983 E023 67.543719 7.012257e-03 1.555705e-04 0.017524552 16 668570 668655 86 + 1.707 1.941 0.787
ENSG00000140983 E024 418.031704 1.192680e-04 2.454784e-01 0.651100152 16 668656 668657 2 + 2.622 2.616 -0.021
ENSG00000140983 E025 413.770490 1.187220e-04 2.469699e-01 0.652462740 16 668658 668658 1 + 2.618 2.611 -0.021
ENSG00000140983 E026 577.370048 8.714323e-05 4.291902e-02 0.323408117 16 668659 668699 41 + 2.768 2.752 -0.053
ENSG00000140983 E027 179.456470 1.171093e-01 2.343341e-02 0.252101286 16 668700 669552 853 + 2.081 2.390 1.032
ENSG00000140983 E028 531.642085 9.473926e-05 8.841737e-01 0.972273564 16 669553 669606 54 + 2.719 2.731 0.039
ENSG00000140983 E029 202.374309 9.882646e-02 2.364620e-02 0.253174959 16 669607 670122 516 + 2.152 2.432 0.934
ENSG00000140983 E030 528.253176 1.140304e-04 4.860943e-01 0.822578711 16 670123 670175 53 + 2.720 2.723 0.011
ENSG00000140983 E031 58.015394 1.787113e-02 2.740239e-02 0.268703636 16 670176 670248 73 + 1.669 1.852 0.619
ENSG00000140983 E032 319.969604 5.928839e-04 6.714544e-01 0.904725076 16 670249 670265 17 + 2.501 2.508 0.022
ENSG00000140983 E033 612.875249 2.745301e-04 8.975943e-01 0.975590372 16 670266 670357 92 + 2.779 2.793 0.045
ENSG00000140983 E034 5.785609 8.010683e-02 4.295845e-01 0.791677510 16 670455 670455 1 + 0.751 0.890 0.547
ENSG00000140983 E035 584.773097 5.532902e-04 5.939944e-02 0.370071132 16 670456 670527 72 + 2.773 2.756 -0.057
ENSG00000140983 E036 471.338430 3.661443e-04 3.287712e-02 0.290375493 16 670528 670557 30 + 2.683 2.659 -0.079
ENSG00000140983 E037 291.866151 2.588930e-03 1.083444e-01 0.472561981 16 670675 670695 21 + 2.478 2.449 -0.097
ENSG00000140983 E038 382.387919 1.357647e-03 3.018890e-01 0.701418823 16 670696 670773 78 + 2.586 2.579 -0.026
ENSG00000140983 E039 68.227382 4.085511e-02 2.037277e-01 0.607568083 16 670774 670775 2 + 1.772 1.900 0.430
ENSG00000140983 E040 158.175462 3.639495e-02 3.183201e-02 0.286637309 16 670776 670888 113 + 2.095 2.293 0.665
ENSG00000140983 E041 100.373949 1.336999e-02 1.756499e-03 0.074537188 16 670889 670891 3 + 1.886 2.105 0.734
ENSG00000140983 E042 571.859703 1.013532e-03 7.889540e-01 0.944756228 16 670892 671000 109 + 2.747 2.768 0.072
ENSG00000140983 E043 166.963710 2.255666e-02 1.595563e-02 0.214577065 16 671001 671081 81 + 2.123 2.312 0.631
ENSG00000140983 E044 97.455243 3.531406e-02 2.523976e-02 0.259528997 16 671082 671082 1 + 1.879 2.089 0.703
ENSG00000140983 E045 353.765227 9.115992e-04 7.075161e-01 0.917863642 16 671083 671114 32 + 2.537 2.561 0.081
ENSG00000140983 E046 534.250840 9.738142e-05 9.479907e-01 0.987791575 16 671115 671203 89 + 2.719 2.734 0.051
ENSG00000140983 E047 25.605305 8.839186e-02 1.426374e-01 0.529008706 16 671204 671312 109 + 1.320 1.509 0.654
ENSG00000140983 E048 504.701183 1.533229e-04 1.595113e-01 0.553642070 16 671697 671781 85 + 2.706 2.698 -0.028
ENSG00000140983 E049 1.001411 1.537876e-02 8.296427e-01   16 671782 671785 4 + 0.268 0.314 0.310
ENSG00000140983 E050 437.683446 1.318445e-03 2.812261e-01 0.684311373 16 671860 671916 57 + 2.646 2.637 -0.027
ENSG00000140983 E051 589.197537 1.990830e-03 5.469556e-02 0.357539776 16 671917 672002 86 + 2.785 2.754 -0.103
ENSG00000140983 E052 41.168861 8.431122e-02 1.013920e-01 0.459873004 16 672003 672083 81 + 1.517 1.714 0.669
ENSG00000140983 E053 821.008231 1.297736e-03 5.991232e-01 0.875251182 16 672084 672181 98 + 2.912 2.918 0.018
ENSG00000140983 E054 948.433964 6.056594e-04 5.274303e-01 0.843661376 16 672254 672384 131 + 2.975 2.980 0.018
ENSG00000140983 E055 145.919215 4.971452e-02 1.390296e-02 0.202379490 16 672385 672488 104 + 2.027 2.280 0.848
ENSG00000140983 E056 723.288960 6.666391e-04 3.001451e-01 0.700014651 16 672489 672566 78 + 2.860 2.858 -0.006
ENSG00000140983 E057 150.273081 4.142157e-02 2.554045e-02 0.260496285 16 672567 672667 101 + 2.062 2.278 0.723
ENSG00000140983 E058 114.050735 3.628361e-02 2.147392e-02 0.242792997 16 672668 672702 35 + 1.942 2.159 0.729
ENSG00000140983 E059 610.508421 2.083201e-04 9.431335e-01 0.986773568 16 672703 672748 46 + 2.777 2.791 0.047
ENSG00000140983 E060 626.763378 9.911482e-04 5.801366e-01 0.866908935 16 672749 672791 43 + 2.783 2.811 0.093
ENSG00000140983 E061 628.128070 3.482579e-04 8.374812e-01 0.959530207 16 672792 672825 34 + 2.788 2.806 0.060
ENSG00000140983 E062 32.433963 3.941361e-02 5.975019e-02 0.370996108 16 672826 672927 102 + 1.409 1.616 0.709
ENSG00000140983 E063 1297.514482 2.874278e-04 8.096996e-01 0.951406724 16 672928 673130 203 + 3.104 3.122 0.061
ENSG00000140983 E064 103.955013 6.763391e-02 4.207999e-02 0.320627843 16 673131 673308 178 + 1.896 2.124 0.765
ENSG00000140983 E065 542.333221 4.270824e-04 8.630738e-01 0.966635820 16 673480 673497 18 + 2.727 2.744 0.058
ENSG00000140983 E066 1825.827904 1.104811e-03 3.787992e-01 0.759206717 16 673498 673933 436 + 3.245 3.279 0.115
ENSG00000140983 E067 741.827140 5.040705e-04 1.187851e-04 0.014833274 16 673934 674174 241 + 2.830 2.910 0.264