ENSG00000135164

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000331242 ENSG00000135164 HEK293_DMSO_6hA HEK293_OSMI2_6hA DMTF1 protein_coding protein_coding 22.7863 17.75192 9.327304 6.947723 0.7302102 -0.9277097 2.3835510 1.1515522 1.0906702 0.83288645 0.5578281 -0.07767179 0.09254167 0.05116667 0.12580000 0.07463333 8.452333e-01 5.139658e-07 FALSE TRUE
ENST00000454008 ENSG00000135164 HEK293_DMSO_6hA HEK293_OSMI2_6hA DMTF1 protein_coding protein_coding 22.7863 17.75192 9.327304 6.947723 0.7302102 -0.9277097 1.4202158 2.5072255 1.5547986 1.12392032 0.2775801 -0.68585750 0.11577500 0.13546667 0.17120000 0.03573333 7.834545e-01 5.139658e-07 FALSE TRUE
ENST00000488352 ENSG00000135164 HEK293_DMSO_6hA HEK293_OSMI2_6hA DMTF1 protein_coding retained_intron 22.7863 17.75192 9.327304 6.947723 0.7302102 -0.9277097 1.3431098 2.0735146 0.3821008 0.77953473 0.0838695 -2.40972281 0.05633333 0.11810000 0.04020000 -0.07790000 1.268334e-02 5.139658e-07 FALSE TRUE
ENST00000579677 ENSG00000135164 HEK293_DMSO_6hA HEK293_OSMI2_6hA DMTF1 protein_coding nonsense_mediated_decay 22.7863 17.75192 9.327304 6.947723 0.7302102 -0.9277097 0.5479682 0.1051972 0.9992848 0.10519724 0.5115807 3.13115518 0.03482500 0.01013333 0.09926667 0.08913333 4.521699e-01 5.139658e-07 FALSE TRUE
ENST00000580803 ENSG00000135164 HEK293_DMSO_6hA HEK293_OSMI2_6hA DMTF1 protein_coding retained_intron 22.7863 17.75192 9.327304 6.947723 0.7302102 -0.9277097 1.9872614 1.9602630 0.6851446 0.83582826 0.2154939 -1.50300327 0.07699583 0.10953333 0.07710000 -0.03243333 7.430195e-01 5.139658e-07 FALSE TRUE
ENST00000583751 ENSG00000135164 HEK293_DMSO_6hA HEK293_OSMI2_6hA DMTF1 protein_coding processed_transcript 22.7863 17.75192 9.327304 6.947723 0.7302102 -0.9277097 1.3765817 1.4213377 0.0000000 0.08518786 0.0000000 -7.16122030 0.07274583 0.10083333 0.00000000 -0.10083333 5.139658e-07 5.139658e-07   FALSE
MSTRG.30166.17 ENSG00000135164 HEK293_DMSO_6hA HEK293_OSMI2_6hA DMTF1 protein_coding   22.7863 17.75192 9.327304 6.947723 0.7302102 -0.9277097 1.8284688 0.2145649 0.6398202 0.21456491 0.3254412 1.53290802 0.06465833 0.01910000 0.07180000 0.05270000 6.249001e-01 5.139658e-07 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_OSMI2_6hA HEK293_DMSO_6hA log2fold_HEK293_DMSO_6hA_HEK293_OSMI2_6hA
ENSG00000135164 E001 0.1544607 0.0326491905 6.273163e-01   7 87152409 87152411 3 + 0.000 0.106 9.997
ENSG00000135164 E002 0.1544607 0.0326491905 6.273163e-01   7 87152412 87152425 14 + 0.000 0.106 12.463
ENSG00000135164 E003 0.1544607 0.0326491905 6.273163e-01   7 87152426 87152431 6 + 0.000 0.106 12.463
ENSG00000135164 E004 0.1544607 0.0326491905 6.273163e-01   7 87152432 87152435 4 + 0.000 0.106 12.463
ENSG00000135164 E005 1.2870993 0.0140179846 4.642849e-01   7 87152436 87152439 4 + 0.448 0.324 -0.708
ENSG00000135164 E006 2.5721930 0.0080676513 2.511201e-02 2.591249e-01 7 87152440 87152447 8 + 0.728 0.377 -1.653
ENSG00000135164 E007 3.0642035 0.0072951449 1.051215e-02 1.774792e-01 7 87152448 87152449 2 + 0.808 0.425 -1.710
ENSG00000135164 E008 3.0642035 0.0072951449 1.051215e-02 1.774792e-01 7 87152450 87152451 2 + 0.808 0.425 -1.710
ENSG00000135164 E009 3.2186641 0.0068921873 2.047508e-02 2.382102e-01 7 87152452 87152452 1 + 0.808 0.468 -1.488
ENSG00000135164 E010 5.8286394 0.0476114976 7.338449e-02 4.030249e-01 7 87152453 87152464 12 + 0.993 0.709 -1.099
ENSG00000135164 E011 10.4606669 0.0164355530 5.412974e-03 1.315731e-01 7 87152465 87152467 3 + 1.226 0.898 -1.198
ENSG00000135164 E012 16.9086412 0.0330071803 3.157722e-02 2.856863e-01 7 87152468 87152497 30 + 1.402 1.118 -1.000
ENSG00000135164 E013 19.6935114 0.0508191224 1.691100e-01 5.660766e-01 7 87152498 87152530 33 + 1.438 1.209 -0.798
ENSG00000135164 E014 20.0587337 0.0399124040 1.136390e-01 4.818283e-01 7 87152531 87152545 15 + 1.446 1.217 -0.799
ENSG00000135164 E015 15.7684682 0.0288133567 1.856343e-01 5.863169e-01 7 87152546 87152553 8 + 1.321 1.145 -0.620
ENSG00000135164 E016 14.4143127 0.0275606266 1.367693e-01 5.205913e-01 7 87152554 87152555 2 + 1.292 1.100 -0.681
ENSG00000135164 E017 0.4660578 0.0235677410 5.217434e-02   7 87152556 87152612 57 + 0.320 0.000 -15.362
ENSG00000135164 E018 0.3535412 0.3455582900 2.155063e-01   7 87152613 87152628 16 + 0.244 0.000 -13.819
ENSG00000135164 E019 0.1767706 0.0348559949 3.801237e-01   7 87152629 87152630 2 + 0.135 0.000 -13.738
ENSG00000135164 E020 1.0606235 1.1267391440 2.788135e-01   7 87152631 87152791 161 + 0.541 0.000 -14.966
ENSG00000135164 E021 0.7070823 0.8367496705 2.393832e-01   7 87152792 87152795 4 + 0.416 0.000 -14.498
ENSG00000135164 E022 1.3477105 0.2780356267 2.752788e-01   7 87152796 87152944 149 + 0.515 0.192 -2.029
ENSG00000135164 E023 1.3290434 0.0127127452 9.291645e-01   7 87154228 87154278 51 + 0.389 0.377 -0.067
ENSG00000135164 E024 11.9720065 0.0023908814 8.433999e-01 9.611239e-01 7 87154390 87154456 67 + 1.125 1.110 -0.052
ENSG00000135164 E025 14.2196768 0.0080888162 7.211630e-01 9.226461e-01 7 87154457 87154528 72 + 1.208 1.171 -0.132
ENSG00000135164 E026 4.5947401 0.1549364460 9.417457e-01 9.864033e-01 7 87155455 87155497 43 + 0.779 0.715 -0.259
ENSG00000135164 E027 2.1115887 0.0751449395 3.922027e-01 7.683528e-01 7 87155498 87155559 62 + 0.389 0.544 0.786
ENSG00000135164 E028 3.9673369 0.0064073004 9.144888e-01 9.795480e-01 7 87162798 87162881 84 + 0.666 0.688 0.090
ENSG00000135164 E029 5.8755898 0.0043842364 3.105542e-02 2.835195e-01 7 87162882 87163219 338 + 0.631 0.928 1.190
ENSG00000135164 E030 2.2103471 0.0163507921 2.836805e-02 2.731300e-01 7 87163220 87163238 19 + 0.237 0.635 2.190
ENSG00000135164 E031 5.2352935 0.0082520419 4.123257e-01 7.819549e-01 7 87163239 87163286 48 + 0.728 0.850 0.483
ENSG00000135164 E032 5.4653291 0.0209934412 9.638650e-01 9.917604e-01 7 87163287 87163332 46 + 0.807 0.831 0.096
ENSG00000135164 E033 5.4242791 0.0043065686 2.111221e-02 2.409756e-01 7 87163333 87163494 162 + 0.591 0.913 1.308
ENSG00000135164 E034 35.4777458 0.0024679908 1.623479e-01 5.571836e-01 7 87163495 87163617 123 + 1.611 1.530 -0.277
ENSG00000135164 E035 0.2892872 0.0274424043 1.411163e-01   7 87164254 87164331 78 + 0.237 0.000 -14.769
ENSG00000135164 E036 35.1226076 0.0009297771 7.562641e-02 4.081811e-01 7 87164934 87165050 117 + 1.612 1.516 -0.328
ENSG00000135164 E037 33.0701010 0.0008905553 3.763772e-01 7.576026e-01 7 87166483 87166605 123 + 1.559 1.512 -0.159
ENSG00000135164 E038 3.8072718 0.0305711545 4.069050e-01 7.781256e-01 7 87167957 87168043 87 + 0.734 0.606 -0.541
ENSG00000135164 E039 29.2330432 0.0049398984 2.199232e-01 6.244876e-01 7 87170995 87171089 95 + 1.530 1.452 -0.268
ENSG00000135164 E040 31.0139324 0.0071552635 3.575238e-01 7.451268e-01 7 87173535 87173649 115 + 1.535 1.487 -0.166
ENSG00000135164 E041 30.2774221 0.0280638198 1.988719e-01 6.020027e-01 7 87174593 87174669 77 + 1.545 1.447 -0.339
ENSG00000135164 E042 40.6964960 0.0079288479 2.586903e-02 2.617833e-01 7 87179545 87179702 158 + 1.696 1.561 -0.459
ENSG00000135164 E043 0.9294398 0.0426577592 7.096930e-01   7 87181196 87181308 113 + 0.320 0.262 -0.399
ENSG00000135164 E044 22.2095922 0.0144170957 9.800004e-02 4.535710e-01 7 87181309 87181341 33 + 1.441 1.311 -0.452
ENSG00000135164 E045 4.9712668 0.0075285881 1.046564e-01 4.660982e-01 7 87182017 87182055 39 + 0.630 0.866 0.961
ENSG00000135164 E046 17.8326944 0.0015571294 3.923929e-01 7.684365e-01 7 87182056 87182197 142 + 1.314 1.252 -0.216
ENSG00000135164 E047 11.2532860 0.0024020184 9.797559e-02 4.535292e-01 7 87182198 87182227 30 + 1.170 1.017 -0.553
ENSG00000135164 E048 25.0397707 0.0016653310 2.576284e-03 9.093319e-02 7 87182228 87182246 19 + 1.518 1.320 -0.684
ENSG00000135164 E049 35.8463297 0.0011993626 7.552605e-02 4.080673e-01 7 87182247 87182337 91 + 1.613 1.516 -0.331
ENSG00000135164 E050 58.9204325 0.0044720315 1.362433e-02 2.006821e-01 7 87184397 87184625 229 + 1.849 1.712 -0.463
ENSG00000135164 E051 0.8197255 0.0173677913 2.956306e-01   7 87184820 87184848 29 + 0.135 0.323 1.605
ENSG00000135164 E052 0.9964960 0.0459980102 6.680099e-01   7 87184849 87184892 44 + 0.238 0.323 0.596
ENSG00000135164 E053 0.5080019 0.1215890201 4.379918e-01   7 87184893 87185020 128 + 0.240 0.106 -1.419
ENSG00000135164 E054 44.9813375 0.0041245195 3.644746e-02 3.018996e-01 7 87185829 87185980 152 + 1.729 1.604 -0.422
ENSG00000135164 E055 4.9446936 0.0049602388 2.079006e-02 2.395258e-01 7 87185981 87185995 15 + 0.549 0.883 1.386
ENSG00000135164 E056 86.3255924 0.0275452511 5.452995e-02 3.571379e-01 7 87185996 87188038 2043 + 1.832 1.991 0.536
ENSG00000135164 E057 13.7473993 0.0021122729 4.857047e-02 3.403918e-01 7 87188039 87188091 53 + 1.048 1.238 0.683
ENSG00000135164 E058 20.2767666 0.0135750402 7.114243e-01 9.191983e-01 7 87188092 87188092 1 + 1.298 1.341 0.149
ENSG00000135164 E059 43.8032394 0.0007441167 7.366024e-01 9.279503e-01 7 87188093 87188197 105 + 1.656 1.645 -0.037
ENSG00000135164 E060 45.6737665 0.0010127806 6.311088e-01 8.884812e-01 7 87188198 87188301 104 + 1.645 1.676 0.105
ENSG00000135164 E061 42.2819103 0.0006692573 5.952211e-01 8.736567e-01 7 87190945 87191027 83 + 1.612 1.648 0.121
ENSG00000135164 E062 23.8025960 0.0013096416 9.992079e-10 3.010505e-06 7 87192477 87193197 721 + 1.034 1.530 1.746
ENSG00000135164 E063 52.5577098 0.0008784036 3.496661e-01 7.391326e-01 7 87193198 87193300 103 + 1.693 1.744 0.174
ENSG00000135164 E064 42.3014412 0.0022304964 9.528706e-01 9.890151e-01 7 87193301 87193353 53 + 1.627 1.633 0.021
ENSG00000135164 E065 11.7635226 0.0870421917 3.308380e-02 2.910380e-01 7 87193354 87193493 140 + 0.795 1.227 1.598
ENSG00000135164 E066 99.8221104 0.0003438106 4.682815e-02 3.354761e-01 7 87193725 87193953 229 + 1.956 2.032 0.258
ENSG00000135164 E067 81.0254131 0.0004001464 4.173137e-01 7.848896e-01 7 87193954 87194102 149 + 1.892 1.930 0.128
ENSG00000135164 E068 17.7883945 0.0076520191 1.602051e-04 1.777965e-02 7 87194103 87194683 581 + 1.018 1.392 1.327
ENSG00000135164 E069 79.0958958 0.0031685081 4.658038e-01 8.116753e-01 7 87194684 87194828 145 + 1.871 1.917 0.156
ENSG00000135164 E070 15.0020194 0.0982295218 1.259533e-02 1.936868e-01 7 87194829 87195030 202 + 0.898 1.319 1.520
ENSG00000135164 E071 72.9104553 0.0078299381 9.893028e-01 9.973600e-01 7 87195031 87195125 95 + 1.855 1.869 0.047
ENSG00000135164 E072 313.8649778 0.0031415203 3.875448e-02 3.097662e-01 7 87195126 87196337 1212 + 2.449 2.520 0.238
ENSG00000135164 E073 0.6356258 0.1931787015 4.529139e-01   7 87201198 87201226 29 + 0.133 0.264 1.227
ENSG00000135164 E074 4.4565239 0.0665550580 2.483754e-02 2.578479e-01 7 87202180 87202690 511 + 0.450 0.851 1.745