ENSG00000126012

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000375379 ENSG00000126012 HEK293_DMSO_6hA HEK293_OSMI2_6hA KDM5C protein_coding protein_coding 73.58305 70.17846 104.3265 4.107594 12.39083 0.5719377 9.516316 3.415228 14.082653 0.1313214 1.936794 2.0406714 0.14462083 0.04883333 0.13433333 0.085500000 4.026481e-16 4.026481e-16 FALSE TRUE
ENST00000375401 ENSG00000126012 HEK293_DMSO_6hA HEK293_OSMI2_6hA KDM5C protein_coding protein_coding 73.58305 70.17846 104.3265 4.107594 12.39083 0.5719377 32.181141 32.273919 49.129481 3.0916501 8.506126 0.6060669 0.42063750 0.45803333 0.46410000 0.006066667 9.769007e-01 4.026481e-16 FALSE TRUE
MSTRG.34293.10 ENSG00000126012 HEK293_DMSO_6hA HEK293_OSMI2_6hA KDM5C protein_coding   73.58305 70.17846 104.3265 4.107594 12.39083 0.5719377 6.644565 3.924436 7.415781 0.7479956 1.737802 0.9163861 0.08355833 0.05763333 0.06883333 0.011200000 7.576545e-01 4.026481e-16 FALSE TRUE
MSTRG.34293.14 ENSG00000126012 HEK293_DMSO_6hA HEK293_OSMI2_6hA KDM5C protein_coding   73.58305 70.17846 104.3265 4.107594 12.39083 0.5719377 5.281553 9.400318 10.807889 0.9063633 0.896365 0.2011036 0.07085000 0.13340000 0.10473333 -0.028666667 2.918528e-01 4.026481e-16 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_OSMI2_6hA HEK293_DMSO_6hA log2fold_HEK293_DMSO_6hA_HEK293_OSMI2_6hA
ENSG00000126012 E001 1.3593090 3.810740e-02 1.961892e-01   X 53176283 53176287 5 - 0.490 0.245 -1.469
ENSG00000126012 E002 1.3593090 3.810740e-02 1.961892e-01   X 53176288 53176292 5 - 0.490 0.245 -1.469
ENSG00000126012 E003 3.8006958 7.333556e-03 6.538003e-01 0.898021128 X 53176293 53176342 50 - 0.648 0.713 0.273
ENSG00000126012 E004 16.9447763 3.076554e-03 9.392761e-01 0.985715839 X 53176343 53176622 280 - 1.266 1.256 -0.034
ENSG00000126012 E005 2.6520922 1.048944e-01 9.970528e-01 0.999320205 X 53176623 53176634 12 - 0.565 0.559 -0.023
ENSG00000126012 E006 5.5229348 4.334507e-02 4.211613e-01 0.786857878 X 53179745 53179826 82 - 0.887 0.743 -0.564
ENSG00000126012 E007 0.7093217 1.855830e-02 7.299484e-01   X 53185055 53185156 102 - 0.185 0.245 0.510
ENSG00000126012 E008 11.3913843 1.693176e-02 9.862348e-02 0.454677211 X 53191080 53191320 241 - 0.980 1.178 0.719
ENSG00000126012 E009 51.7155026 5.866101e-04 2.554842e-05 0.005659898 X 53191321 53191622 302 - 1.616 1.820 0.692
ENSG00000126012 E010 84.1335783 4.723469e-03 1.584774e-05 0.004222048 X 53191623 53192157 535 - 1.817 2.035 0.733
ENSG00000126012 E011 136.7161893 2.040931e-03 1.036260e-01 0.463901021 X 53192158 53192256 99 - 2.105 2.166 0.204
ENSG00000126012 E012 238.1898492 7.195623e-04 3.732901e-02 0.304957245 X 53192257 53192291 35 - 2.351 2.405 0.179
ENSG00000126012 E013 758.3524321 1.060175e-04 5.111981e-03 0.128095801 X 53192292 53192486 195 - 2.861 2.898 0.122
ENSG00000126012 E014 674.1683379 7.145716e-04 1.936708e-01 0.595883655 X 53192487 53192691 205 - 2.817 2.841 0.082
ENSG00000126012 E015 262.3232865 1.567666e-04 2.547386e-04 0.023821940 X 53192692 53192837 146 - 2.381 2.461 0.266
ENSG00000126012 E016 260.3558704 2.458793e-04 9.900324e-01 0.997551297 X 53192838 53192892 55 - 2.417 2.415 -0.005
ENSG00000126012 E017 404.4098200 1.071156e-04 9.464618e-01 0.987441460 X 53192893 53192928 36 - 2.605 2.605 0.000
ENSG00000126012 E018 443.5729466 9.461963e-05 9.592159e-01 0.990643924 X 53192929 53192943 15 - 2.645 2.643 -0.007
ENSG00000126012 E019 497.4279984 8.629948e-05 9.876401e-01 0.997006393 X 53192944 53192965 22 - 2.694 2.693 -0.003
ENSG00000126012 E020 593.6206762 8.163319e-05 5.804411e-01 0.867070922 X 53192966 53193018 53 - 2.774 2.765 -0.031
ENSG00000126012 E021 447.2498696 9.583359e-05 8.698933e-01 0.968112737 X 53193019 53193035 17 - 2.649 2.645 -0.013
ENSG00000126012 E022 1424.5369798 5.202074e-05 4.321818e-01 0.793141013 X 53193036 53193332 297 - 3.154 3.146 -0.028
ENSG00000126012 E023 774.2576596 7.115870e-05 8.594198e-01 0.965569964 X 53193437 53193497 61 - 2.887 2.884 -0.011
ENSG00000126012 E024 1090.0333201 7.053219e-05 8.973731e-01 0.975503764 X 53193498 53193636 139 - 3.033 3.034 0.002
ENSG00000126012 E025 206.5049584 1.838151e-04 2.684258e-01 0.672969189 X 53193773 53193781 9 - 2.325 2.297 -0.097
ENSG00000126012 E026 813.9827775 1.043273e-03 7.198814e-01 0.922149445 X 53193782 53193851 70 - 2.910 2.904 -0.018
ENSG00000126012 E027 2262.1690464 4.516028e-04 2.496913e-01 0.655285196 X 53194139 53194738 600 - 3.357 3.346 -0.036
ENSG00000126012 E028 935.1361313 1.972080e-04 2.181678e-01 0.622801219 X 53194931 53195068 138 - 2.976 2.960 -0.054
ENSG00000126012 E029 689.5321025 9.180180e-05 8.505821e-01 0.963128015 X 53195231 53195308 78 - 2.836 2.837 0.005
ENSG00000126012 E030 852.3986707 6.924697e-04 6.492863e-01 0.896121863 X 53195309 53195410 102 - 2.930 2.924 -0.022
ENSG00000126012 E031 982.0957649 7.085368e-05 9.339793e-01 0.984476153 X 53195916 53196054 139 - 2.988 2.988 0.001
ENSG00000126012 E032 1371.3377820 8.243647e-05 4.892921e-01 0.824250169 X 53196686 53197044 359 - 3.137 3.129 -0.023
ENSG00000126012 E033 21.9141024 1.942233e-01 6.277249e-02 0.379123281 X 53197657 53197770 114 - 1.164 1.515 1.224
ENSG00000126012 E034 618.1334435 4.409894e-04 7.307084e-01 0.925960500 X 53197771 53197876 106 - 2.789 2.785 -0.013
ENSG00000126012 E035 798.4122242 9.405147e-05 7.403338e-01 0.929200903 X 53198490 53198637 148 - 2.901 2.896 -0.017
ENSG00000126012 E036 63.7427313 7.803474e-02 6.963733e-02 0.394811619 X 53198638 53198763 126 - 1.690 1.920 0.777
ENSG00000126012 E037 773.2797625 7.832027e-05 9.666406e-01 0.992408541 X 53198764 53198888 125 - 2.887 2.886 -0.002
ENSG00000126012 E038 960.5852843 1.189160e-04 2.681355e-01 0.672620017 X 53198977 53199158 182 - 2.974 2.987 0.043
ENSG00000126012 E039 4.7107762 1.783786e-01 4.203612e-02 0.320574512 X 53200109 53201303 1195 - 0.510 0.931 1.754
ENSG00000126012 E040 5.1757725 9.956515e-02 4.400043e-02 0.326441001 X 53201304 53201549 246 - 0.581 0.972 1.573
ENSG00000126012 E041 856.6618854 2.031821e-04 3.663382e-01 0.751101694 X 53201550 53201744 195 - 2.925 2.937 0.040
ENSG00000126012 E042 656.7222586 9.727564e-05 9.828755e-01 0.995808724 X 53201854 53201973 120 - 2.814 2.813 -0.001
ENSG00000126012 E043 3.0668685 4.154426e-01 6.451498e-01 0.894463081 X 53201974 53202773 800 - 0.683 0.459 -1.023
ENSG00000126012 E044 1.1514323 1.419747e-02 4.037604e-01   X 53208891 53209081 191 - 0.254 0.400 0.927
ENSG00000126012 E045 10.8536375 2.711982e-03 2.284933e-02 0.249418353 X 53209082 53210413 1332 - 0.965 1.187 0.808
ENSG00000126012 E046 764.3941916 6.363232e-05 8.358808e-01 0.958852631 X 53210414 53210576 163 - 2.880 2.881 0.005
ENSG00000126012 E047 695.2988010 5.585368e-04 4.219659e-01 0.787346312 X 53210676 53210857 182 - 2.830 2.847 0.055
ENSG00000126012 E048 648.7587517 6.845056e-04 6.479020e-02 0.383862464 X 53211497 53211655 159 - 2.792 2.828 0.121
ENSG00000126012 E049 1.6381985 1.261093e-02 2.398608e-01 0.645014559 X 53211656 53211786 131 - 0.315 0.515 1.094
ENSG00000126012 E050 628.2339904 8.355052e-05 6.061851e-01 0.878178046 X 53211787 53211906 120 - 2.794 2.800 0.020
ENSG00000126012 E051 766.6164575 4.553801e-04 7.653511e-01 0.937753386 X 53214689 53214847 159 - 2.884 2.880 -0.015
ENSG00000126012 E052 0.6183183 1.909145e-02 1.743299e-01   X 53215714 53215794 81 - 0.102 0.330 2.100
ENSG00000126012 E053 811.0663161 1.113041e-03 8.005989e-01 0.948441699 X 53215795 53215976 182 - 2.904 2.911 0.023
ENSG00000126012 E054 604.4229599 6.901862e-04 9.998905e-01 0.999980277 X 53216074 53216197 124 - 2.779 2.780 0.001
ENSG00000126012 E055 591.6258421 2.803088e-04 7.091290e-02 0.397545687 X 53217143 53217274 132 - 2.784 2.754 -0.100
ENSG00000126012 E056 208.9272310 1.382395e-03 1.031786e-01 0.462958494 X 53217275 53217277 3 - 2.341 2.293 -0.160
ENSG00000126012 E057 327.0395288 1.630073e-04 5.539241e-02 0.359291550 X 53217796 53217809 14 - 2.531 2.491 -0.133
ENSG00000126012 E058 322.4274971 1.384877e-04 8.688398e-02 0.431656097 X 53217810 53217828 19 - 2.522 2.486 -0.119
ENSG00000126012 E059 357.1294686 1.392552e-03 4.834289e-01 0.821143862 X 53217829 53217852 24 - 2.557 2.543 -0.049
ENSG00000126012 E060 529.5841397 1.417313e-03 6.780472e-01 0.907414630 X 53217853 53217966 114 - 2.725 2.718 -0.024
ENSG00000126012 E061 326.0476550 1.169454e-04 1.426914e-01 0.529114125 X 53218276 53218314 39 - 2.525 2.495 -0.102
ENSG00000126012 E062 462.1133292 1.190891e-04 3.094143e-01 0.707603217 X 53218315 53218398 84 - 2.670 2.652 -0.061
ENSG00000126012 E063 1.3290434 4.374745e-02 3.897456e-01   X 53218399 53218563 165 - 0.312 0.461 0.844
ENSG00000126012 E064 0.2920894 2.678342e-02 7.923242e-01   X 53218564 53218712 149 - 0.102 0.140 0.517
ENSG00000126012 E065 0.0000000       X 53218713 53218737 25 -      
ENSG00000126012 E066 447.9388489 2.651484e-04 4.341360e-01 0.793976567 X 53220839 53220916 78 - 2.654 2.640 -0.048
ENSG00000126012 E067 24.5637129 1.564975e-03 2.796861e-01 0.682990250 X 53221688 53221704 17 - 1.432 1.354 -0.270
ENSG00000126012 E068 26.6428307 8.455993e-03 4.606645e-01 0.808924560 X 53221705 53221730 26 - 1.458 1.403 -0.190
ENSG00000126012 E069 23.3377252 3.232405e-02 7.653043e-01 0.937747518 X 53221731 53221793 63 - 1.351 1.412 0.211
ENSG00000126012 E070 3.1198879 6.757218e-03 1.436842e-04 0.016767439 X 53221794 53221818 25 - 0.254 0.849 2.929
ENSG00000126012 E071 5.2252912 1.399481e-01 6.323575e-01 0.888883605 X 53223985 53224066 82 - 0.742 0.823 0.321
ENSG00000126012 E072 866.7003832 1.000001e-03 9.745546e-02 0.452727638 X 53224740 53225422 683 - 2.946 2.919 -0.088