ENSG00000115694

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000401869 ENSG00000115694 HEK293_DMSO_6hA HEK293_OSMI2_6hA STK25 protein_coding protein_coding 232.606 231.296 326.1007 16.46206 46.53653 0.495559 67.06027 60.418318 112.69331 7.679337 17.704266 0.8992332 0.28322083 0.25896667 0.34410000 0.08513333 0.04306596 0.04306596 FALSE TRUE
ENST00000403346 ENSG00000115694 HEK293_DMSO_6hA HEK293_OSMI2_6hA STK25 protein_coding protein_coding 232.606 231.296 326.1007 16.46206 46.53653 0.495559 19.39410 6.746957 23.25789 0.837337 7.582141 1.7838949 0.08235417 0.02893333 0.06706667 0.03813333 0.15131836 0.04306596 FALSE TRUE
ENST00000423004 ENSG00000115694 HEK293_DMSO_6hA HEK293_OSMI2_6hA STK25 protein_coding protein_coding 232.606 231.296 326.1007 16.46206 46.53653 0.495559 22.25505 20.494811 29.60865 3.176725 6.103910 0.5305436 0.09446667 0.08770000 0.08890000 0.00120000 0.98888362 0.04306596 FALSE TRUE
ENST00000535007 ENSG00000115694 HEK293_DMSO_6hA HEK293_OSMI2_6hA STK25 protein_coding protein_coding 232.606 231.296 326.1007 16.46206 46.53653 0.495559 20.26648 17.483415 30.54161 1.951199 7.020059 0.8044363 0.07917917 0.07523333 0.09126667 0.01603333 0.72114254 0.04306596 FALSE TRUE
MSTRG.20194.6 ENSG00000115694 HEK293_DMSO_6hA HEK293_OSMI2_6hA STK25 protein_coding   232.606 231.296 326.1007 16.46206 46.53653 0.495559 18.38568 12.270847 27.65226 2.491477 7.146242 1.1715089 0.07180417 0.05233333 0.08160000 0.02926667 0.30964559 0.04306596 TRUE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_OSMI2_6hA HEK293_DMSO_6hA log2fold_HEK293_DMSO_6hA_HEK293_OSMI2_6hA
ENSG00000115694 E001 26.467117 3.636795e-02 4.832961e-01 0.8211358882 2 241492670 241493387 718 - 1.397 1.481 0.292
ENSG00000115694 E002 9.545166 2.441899e-02 7.293414e-01 0.9254139358 2 241493388 241493469 82 - 1.037 0.995 -0.156
ENSG00000115694 E003 7.316509 2.151758e-02 7.117483e-01 0.9192979578 2 241493470 241493487 18 - 0.891 0.941 0.188
ENSG00000115694 E004 10.372615 2.585447e-02 1.773037e-01 0.5759364420 2 241493488 241493540 53 - 0.970 1.138 0.611
ENSG00000115694 E005 43.928656 1.724543e-02 5.068888e-01 0.8332495782 2 241493541 241494706 1166 - 1.620 1.680 0.207
ENSG00000115694 E006 93.728418 6.931270e-03 5.537015e-01 0.8553649227 2 241494707 241494842 136 - 1.980 1.959 -0.070
ENSG00000115694 E007 247.353346 1.025689e-03 3.949263e-01 0.7699883283 2 241494843 241495016 174 - 2.399 2.382 -0.056
ENSG00000115694 E008 118.093458 3.043469e-04 4.990850e-01 0.8290766548 2 241495017 241495018 2 - 2.079 2.063 -0.055
ENSG00000115694 E009 164.912833 2.329431e-04 6.901956e-01 0.9118880810 2 241495019 241495021 3 - 2.218 2.213 -0.018
ENSG00000115694 E010 287.393517 2.777066e-03 6.846770e-01 0.9099501755 2 241495022 241495045 24 - 2.447 2.467 0.067
ENSG00000115694 E011 287.368055 3.512622e-03 7.318399e-01 0.9263383605 2 241495046 241495049 4 - 2.448 2.466 0.062
ENSG00000115694 E012 1364.715531 7.109712e-04 6.524122e-01 0.8974753706 2 241495050 241495248 199 - 3.131 3.133 0.005
ENSG00000115694 E013 2212.098758 3.628785e-04 3.031354e-01 0.7024746522 2 241495249 241495447 199 - 3.342 3.341 -0.006
ENSG00000115694 E014 1220.587968 5.535069e-04 9.221845e-02 0.4425611336 2 241495448 241495489 42 - 3.090 3.075 -0.050
ENSG00000115694 E015 1232.204758 7.903939e-04 4.254557e-01 0.7895047247 2 241495490 241495537 48 - 3.088 3.087 -0.003
ENSG00000115694 E016 1907.220107 9.146395e-04 7.443796e-01 0.9309233292 2 241495538 241495701 164 - 3.274 3.281 0.025
ENSG00000115694 E017 6.913759 4.811660e-02 4.943448e-01 0.8264718503 2 241496396 241496397 2 - 0.838 0.964 0.480
ENSG00000115694 E018 1738.307437 1.884828e-03 2.313038e-01 0.6363793218 2 241496398 241496534 137 - 3.241 3.230 -0.038
ENSG00000115694 E019 20.425142 2.561569e-02 4.619814e-04 0.0344694947 2 241496535 241496538 4 - 1.116 1.500 1.346
ENSG00000115694 E020 29.875271 7.848019e-02 8.327994e-03 0.1591747138 2 241497182 241497299 118 - 1.270 1.660 1.345
ENSG00000115694 E021 19.662916 1.169684e-01 6.852325e-02 0.3924308730 2 241497300 241497332 33 - 1.151 1.453 1.056
ENSG00000115694 E022 24.502467 1.365452e-01 5.609875e-02 0.3612128871 2 241497333 241497378 46 - 1.228 1.555 1.131
ENSG00000115694 E023 40.481844 1.404599e-01 1.929188e-02 0.2320248382 2 241497379 241497615 237 - 1.395 1.794 1.359
ENSG00000115694 E024 1384.542862 1.166300e-03 2.540507e-02 0.2601080801 2 241497616 241497687 72 - 3.149 3.122 -0.088
ENSG00000115694 E025 1804.018698 2.023589e-04 9.661723e-07 0.0005530454 2 241498235 241498349 115 - 3.271 3.228 -0.144
ENSG00000115694 E026 110.705246 5.928032e-02 2.303066e-02 0.2501073013 2 241498350 241498509 160 - 1.901 2.180 0.934
ENSG00000115694 E027 97.880604 7.033508e-02 1.514189e-02 0.2092503887 2 241498510 241498638 129 - 1.823 2.143 1.074
ENSG00000115694 E028 1187.091234 5.378002e-04 1.376419e-02 0.2015420149 2 241498639 241498669 31 - 3.082 3.055 -0.089
ENSG00000115694 E029 1846.205575 5.726973e-04 3.576825e-01 0.7452276498 2 241498670 241498742 73 - 3.262 3.262 -0.002
ENSG00000115694 E030 1671.271563 9.607331e-05 3.525264e-01 0.7414010643 2 241498743 241498784 42 - 3.220 3.219 -0.005
ENSG00000115694 E031 32.680178 3.542045e-02 1.603642e-02 0.2151337190 2 241498785 241498833 49 - 1.379 1.653 0.940
ENSG00000115694 E032 1563.461180 1.001687e-04 8.827529e-01 0.9719026324 2 241498989 241499032 44 - 3.187 3.196 0.029
ENSG00000115694 E033 1433.251175 4.803230e-05 4.619994e-01 0.8097052486 2 241499033 241499072 40 - 3.154 3.153 -0.003
ENSG00000115694 E034 1959.165289 4.940465e-05 3.881767e-01 0.7659639747 2 241499073 241499174 102 - 3.289 3.288 -0.003
ENSG00000115694 E035 4.036899 5.331123e-03 8.503816e-01 0.9631192891 2 241499175 241499190 16 - 0.689 0.721 0.130
ENSG00000115694 E036 1564.354736 4.388035e-05 1.466572e-01 0.5345068595 2 241499257 241499322 66 - 3.183 3.202 0.066
ENSG00000115694 E037 1586.259872 2.735931e-04 2.387181e-01 0.6440563454 2 241499323 241499386 64 - 3.186 3.210 0.078
ENSG00000115694 E038 1173.004430 5.791124e-05 3.033485e-01 0.7025996725 2 241499387 241499406 20 - 3.058 3.075 0.059
ENSG00000115694 E039 971.299030 5.724717e-05 1.302985e-01 0.5108358888 2 241499407 241499414 8 - 2.973 2.997 0.080
ENSG00000115694 E040 110.511525 5.856982e-02 4.081237e-02 0.3168300150 2 241499415 241499417 3 - 1.921 2.164 0.815
ENSG00000115694 E041 182.000690 4.979326e-02 1.119120e-02 0.1830683054 2 241499418 241499509 92 - 2.114 2.396 0.942
ENSG00000115694 E042 457.447062 6.898314e-02 2.721757e-02 0.2678134968 2 241499510 241499902 393 - 2.519 2.790 0.902
ENSG00000115694 E043 261.829014 6.118480e-02 3.543592e-02 0.2985606700 2 241499903 241500029 127 - 2.291 2.539 0.826
ENSG00000115694 E044 137.412605 7.243387e-02 3.430386e-02 0.2950333132 2 241500030 241500046 17 - 1.999 2.270 0.907
ENSG00000115694 E045 184.226806 6.706860e-02 5.189704e-02 0.3495003726 2 241500047 241500142 96 - 2.144 2.383 0.798
ENSG00000115694 E046 117.370209 6.374999e-02 4.809954e-02 0.3391927311 2 241500143 241500171 29 - 1.947 2.191 0.817
ENSG00000115694 E047 70.146098 7.589022e-02 6.049316e-02 0.3726906943 2 241500172 241500172 1 - 1.720 1.974 0.855
ENSG00000115694 E048 1692.707107 4.321819e-05 7.747772e-01 0.9407852776 2 241500173 241500259 87 - 3.221 3.230 0.030
ENSG00000115694 E049 993.110124 2.705037e-04 1.739456e-01 0.5715713662 2 241500260 241500281 22 - 2.997 2.988 -0.030
ENSG00000115694 E050 993.775113 1.043651e-03 3.045930e-01 0.7034970871 2 241500740 241500762 23 - 2.994 2.991 -0.011
ENSG00000115694 E051 896.065192 1.456615e-03 7.862271e-01 0.9440032604 2 241500763 241500779 17 - 2.943 2.955 0.040
ENSG00000115694 E052 921.780587 3.761618e-04 8.789486e-01 0.9709329847 2 241500780 241500796 17 - 2.954 2.968 0.045
ENSG00000115694 E053 34.898567 1.011338e-01 2.242275e-02 0.2475285686 2 241500797 241500847 51 - 1.362 1.714 1.207
ENSG00000115694 E054 25.169027 1.123736e-01 3.789627e-02 0.3067483759 2 241500848 241500859 12 - 1.231 1.573 1.183
ENSG00000115694 E055 31.722610 1.648330e-01 7.486487e-02 0.4066936521 2 241500860 241500919 60 - 1.337 1.665 1.124
ENSG00000115694 E056 53.445501 1.720960e-01 7.192445e-02 0.3997592488 2 241500920 241501077 158 - 1.571 1.878 1.040
ENSG00000115694 E057 22.574077 4.063009e-02 2.031045e-03 0.0803251563 2 241501357 241501392 36 - 1.146 1.544 1.389
ENSG00000115694 E058 29.553796 1.301933e-01 3.291078e-02 0.2905570501 2 241501393 241501477 85 - 1.279 1.649 1.274
ENSG00000115694 E059 1115.131653 7.688048e-05 4.421175e-01 0.7988004074 2 241501478 241501516 39 - 3.044 3.043 -0.005
ENSG00000115694 E060 906.921681 1.279770e-04 7.395887e-01 0.9289884448 2 241501517 241501527 11 - 2.953 2.956 0.010
ENSG00000115694 E061 1926.108235 5.885170e-04 1.910812e-01 0.5929781504 2 241501528 241501708 181 - 3.282 3.279 -0.011
ENSG00000115694 E062 48.572811 2.571827e-02 1.269327e-03 0.0621315218 2 241501709 241501799 91 - 1.525 1.838 1.062
ENSG00000115694 E063 38.929442 8.860364e-02 2.406313e-02 0.2545794148 2 241501832 241502003 172 - 1.420 1.753 1.134
ENSG00000115694 E064 25.050224 9.253127e-02 2.749939e-02 0.2690562195 2 241504038 241504096 59 - 1.230 1.569 1.173
ENSG00000115694 E065 943.270409 8.009307e-04 1.911685e-07 0.0001676102 2 241508006 241508135 130 - 3.004 2.923 -0.271
ENSG00000115694 E066 311.329435 3.732307e-04 1.924029e-07 0.0001678047 2 241508136 241508317 182 - 2.534 2.425 -0.362
ENSG00000115694 E067 25.118661 5.049160e-03 7.347642e-02 0.4031691638 2 241508318 241508362 45 - 1.475 1.341 -0.463
ENSG00000115694 E068 332.686998 3.096598e-03 4.959118e-03 0.1264067770 2 241508443 241508504 62 - 2.554 2.470 -0.279
ENSG00000115694 E069 314.756257 3.307034e-03 4.575454e-04 0.0342145264 2 241508505 241508695 191 - 2.542 2.429 -0.379
ENSG00000115694 E070 0.000000       2 241509223 241509730 508 -