ENSG00000115392

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000233741 ENSG00000115392 HEK293_DMSO_6hA HEK293_OSMI2_6hA FANCL protein_coding protein_coding 21.33735 16.40908 16.49047 4.755045 2.435179 0.007133915 8.2850968 5.2899040 4.1313620 2.2600051 2.2392582 -0.3558609 0.37574167 0.30083333 0.21850000 -0.08233333 0.81650959 0.02162126 FALSE TRUE
ENST00000402135 ENSG00000115392 HEK293_DMSO_6hA HEK293_OSMI2_6hA FANCL protein_coding protein_coding 21.33735 16.40908 16.49047 4.755045 2.435179 0.007133915 3.6959437 1.8083082 4.4052755 0.5147489 0.7657305 1.2799067 0.17440417 0.11383333 0.26643333 0.15260000 0.02162126 0.02162126 FALSE TRUE
ENST00000427708 ENSG00000115392 HEK293_DMSO_6hA HEK293_OSMI2_6hA FANCL protein_coding protein_coding 21.33735 16.40908 16.49047 4.755045 2.435179 0.007133915 1.7682148 0.1478028 0.9244548 0.1478028 0.2725702 2.5660021 0.08262917 0.01196667 0.05816667 0.04620000 0.29386440 0.02162126 FALSE TRUE
ENST00000696568 ENSG00000115392 HEK293_DMSO_6hA HEK293_OSMI2_6hA FANCL protein_coding retained_intron 21.33735 16.40908 16.49047 4.755045 2.435179 0.007133915 0.5947226 1.3586253 0.3998126 0.4492588 0.1502845 -1.7396914 0.02657917 0.08103333 0.02803333 -0.05300000 0.28715824 0.02162126   FALSE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_OSMI2_6hA HEK293_DMSO_6hA log2fold_HEK293_DMSO_6hA_HEK293_OSMI2_6hA
ENSG00000115392 E001 0.0000000       2 58159243 58159245 3 -      
ENSG00000115392 E002 0.0000000       2 58159246 58159246 1 -      
ENSG00000115392 E003 0.4688600 0.0217681645 5.001206e-01   2 58159247 58159247 1 - 0.223 0.114 -1.166
ENSG00000115392 E004 1.2589465 0.0143460444 5.957763e-01   2 58159248 58159248 1 - 0.302 0.397 0.573
ENSG00000115392 E005 1.7250042 0.0226411856 6.356200e-01 8.905084e-01 2 58159249 58159249 1 - 0.479 0.397 -0.427
ENSG00000115392 E006 1.7250042 0.0226411856 6.356200e-01 8.905084e-01 2 58159250 58159250 1 - 0.479 0.397 -0.427
ENSG00000115392 E007 2.1731915 0.0090034878 4.478306e-01 8.024043e-01 2 58159251 58159251 1 - 0.566 0.446 -0.581
ENSG00000115392 E008 2.1731915 0.0090034878 4.478306e-01 8.024043e-01 2 58159252 58159252 1 - 0.566 0.446 -0.581
ENSG00000115392 E009 2.3276522 0.0083133127 6.164871e-01 8.827008e-01 2 58159253 58159255 3 - 0.566 0.490 -0.359
ENSG00000115392 E010 2.4994204 0.0080896863 7.999458e-01 9.482755e-01 2 58159256 58159258 3 - 0.566 0.530 -0.167
ENSG00000115392 E011 2.4994204 0.0080896863 7.999458e-01 9.482755e-01 2 58159259 58159260 2 - 0.566 0.530 -0.167
ENSG00000115392 E012 2.4994204 0.0080896863 7.999458e-01 9.482755e-01 2 58159261 58159262 2 - 0.566 0.530 -0.167
ENSG00000115392 E013 2.4994204 0.0080896863 7.999458e-01 9.482755e-01 2 58159263 58159265 3 - 0.566 0.530 -0.167
ENSG00000115392 E014 3.8270603 0.0061290577 9.259023e-01 9.824394e-01 2 58159266 58159270 5 - 0.672 0.689 0.074
ENSG00000115392 E015 3.8270603 0.0061290577 9.259023e-01 9.824394e-01 2 58159271 58159272 2 - 0.672 0.689 0.074
ENSG00000115392 E016 6.2027334 0.0038750347 8.046921e-01 9.496652e-01 2 58159273 58159277 5 - 0.868 0.844 -0.094
ENSG00000115392 E017 7.2614343 0.0034123186 8.810245e-01 9.714423e-01 2 58159278 58159280 3 - 0.924 0.913 -0.042
ENSG00000115392 E018 7.9098671 0.0032035480 8.617360e-01 9.662483e-01 2 58159281 58159282 2 - 0.957 0.943 -0.052
ENSG00000115392 E019 12.5932291 0.0112415197 4.343779e-01 7.939854e-01 2 58159283 58159293 11 - 1.170 1.092 -0.280
ENSG00000115392 E020 30.4519119 0.0008772166 7.761655e-01 9.411434e-01 2 58159294 58159313 20 - 1.508 1.498 -0.034
ENSG00000115392 E021 37.7751663 0.0007288954 9.942378e-01 9.985323e-01 2 58159314 58159324 11 - 1.590 1.597 0.024
ENSG00000115392 E022 35.8940642 0.0007655749 8.629632e-01 9.666358e-01 2 58159325 58159331 7 - 1.563 1.580 0.059
ENSG00000115392 E023 97.3517984 0.0003097005 8.819484e-01 9.717530e-01 2 58159332 58159421 90 - 1.991 2.004 0.042
ENSG00000115392 E024 90.7458484 0.0003607713 8.859718e-01 9.727779e-01 2 58159422 58159434 13 - 1.960 1.973 0.042
ENSG00000115392 E025 83.6659581 0.0003648287 5.897872e-01 8.712008e-01 2 58159435 58159437 3 - 1.917 1.944 0.093
ENSG00000115392 E026 108.2228571 0.0002928586 6.499129e-01 8.963716e-01 2 58159438 58159466 29 - 2.030 2.052 0.076
ENSG00000115392 E027 163.1339004 0.0002223758 5.242765e-01 8.423171e-01 2 58159467 58159568 102 - 2.204 2.230 0.085
ENSG00000115392 E028 87.1492891 0.0003916321 7.482953e-01 9.321406e-01 2 58159569 58159569 1 - 1.951 1.947 -0.012
ENSG00000115392 E029 88.4289049 0.0004423735 6.670996e-01 9.030816e-01 2 58159570 58159570 1 - 1.959 1.952 -0.025
ENSG00000115392 E030 102.7411841 0.0012553613 7.469785e-01 9.317323e-01 2 58159571 58159581 11 - 2.007 2.030 0.077
ENSG00000115392 E031 103.2833395 0.0016757683 7.172520e-01 9.211370e-01 2 58159582 58159590 9 - 2.008 2.034 0.088
ENSG00000115392 E032 112.1687259 0.0003750801 4.401584e-01 7.979156e-01 2 58159591 58159613 23 - 2.038 2.072 0.115
ENSG00000115392 E033 105.0509232 0.0004483174 8.901230e-02 4.364463e-01 2 58159614 58159650 37 - 1.990 2.058 0.228
ENSG00000115392 E034 108.3866924 0.0003312118 1.342115e-01 5.165616e-01 2 58159651 58159681 31 - 2.010 2.069 0.197
ENSG00000115392 E035 83.4620250 0.0005858678 5.188160e-01 8.395019e-01 2 58159682 58159690 9 - 1.913 1.947 0.114
ENSG00000115392 E036 80.2761585 0.0005867280 8.032627e-01 9.492409e-01 2 58159691 58159693 3 - 1.906 1.924 0.062
ENSG00000115392 E037 89.4679708 0.0004535894 9.691654e-01 9.928193e-01 2 58159694 58159711 18 - 1.959 1.966 0.024
ENSG00000115392 E038 139.2618296 0.0002299343 6.369181e-01 8.911286e-01 2 58159712 58159800 89 - 2.138 2.160 0.074
ENSG00000115392 E039 13.0895695 0.0288664777 3.462389e-02 2.962163e-01 2 58159801 58160107 307 - 0.976 1.241 0.957
ENSG00000115392 E040 125.5626993 0.0002954780 1.846587e-01 5.851799e-01 2 58160108 58160179 72 - 2.075 2.125 0.167
ENSG00000115392 E041 9.4222393 0.0432552537 1.453571e-02 2.059191e-01 2 58160180 58160625 446 - 0.765 1.138 1.404
ENSG00000115392 E042 83.9166764 0.0003378832 1.001487e-01 4.575971e-01 2 58161522 58161545 24 - 1.891 1.962 0.236
ENSG00000115392 E043 124.2597154 0.0002583252 4.383361e-01 7.967244e-01 2 58161546 58161638 93 - 2.083 2.115 0.107
ENSG00000115392 E044 20.3016002 0.0175636512 4.624995e-07 3.233769e-04 2 58161639 58161910 272 - 0.945 1.488 1.932
ENSG00000115392 E045 4.0577608 0.0568548111 7.303289e-03 1.503940e-01 2 58161911 58161960 50 - 0.369 0.861 2.222
ENSG00000115392 E046 40.4201629 0.0865671945 1.689763e-02 2.200117e-01 2 58161961 58162865 905 - 1.400 1.728 1.122
ENSG00000115392 E047 60.3976730 0.0005189030 7.293253e-01 9.254139e-01 2 58162866 58162888 23 - 1.779 1.802 0.080
ENSG00000115392 E048 60.6909321 0.0005429670 7.398969e-01 9.291082e-01 2 58162889 58162920 32 - 1.783 1.807 0.078
ENSG00000115392 E049 49.2611603 0.0019931612 9.891795e-01 9.973346e-01 2 58162921 58162932 12 - 1.701 1.711 0.034
ENSG00000115392 E050 50.1665689 0.0019961053 6.490054e-01 8.960975e-01 2 58162933 58162939 7 - 1.698 1.729 0.104
ENSG00000115392 E051 51.3058254 0.0033260361 9.511850e-01 9.886155e-01 2 58162940 58162947 8 - 1.722 1.731 0.030
ENSG00000115392 E052 22.3278860 0.0712907374 9.371864e-03 1.685112e-01 2 58162948 58163028 81 - 1.113 1.490 1.320
ENSG00000115392 E053 73.5611031 0.0004557032 8.118905e-01 9.521298e-01 2 58163029 58163074 46 - 1.882 1.879 -0.008
ENSG00000115392 E054 28.3610732 0.0751118309 1.115358e-01 4.783624e-01 2 58163075 58163433 359 - 1.331 1.544 0.735
ENSG00000115392 E055 67.7669550 0.0051454642 8.323419e-02 4.243502e-01 2 58163434 58163493 60 - 1.891 1.803 -0.299
ENSG00000115392 E056 46.1050489 0.0073654990 7.113064e-02 3.979939e-01 2 58163494 58163517 24 - 1.740 1.627 -0.383
ENSG00000115392 E057 14.7712885 0.0019434691 1.062622e-01 4.686630e-01 2 58163518 58164029 512 - 1.106 1.256 0.535
ENSG00000115392 E058 20.9303682 0.1177128417 1.122717e-01 4.796741e-01 2 58164030 58164601 572 - 1.175 1.428 0.887
ENSG00000115392 E059 14.1630598 0.1437690528 2.640132e-01 6.689631e-01 2 58164602 58165011 410 - 1.066 1.246 0.646
ENSG00000115392 E060 8.2397379 0.0842961991 7.302525e-02 4.022172e-01 2 58165012 58165116 105 - 0.735 1.086 1.334
ENSG00000115392 E061 6.3932508 0.0768368946 4.450301e-03 1.196002e-01 2 58165117 58165222 106 - 0.484 1.031 2.249
ENSG00000115392 E062 16.2563735 0.1191738287 2.064260e-02 2.387565e-01 2 58165223 58165651 429 - 0.973 1.365 1.400
ENSG00000115392 E063 6.8859660 0.0520372194 5.868331e-02 3.683327e-01 2 58165652 58165723 72 - 0.704 0.998 1.141
ENSG00000115392 E064 102.5696708 0.0090553776 1.475960e-01 5.358055e-01 2 58165724 58165872 149 - 2.061 1.977 -0.279
ENSG00000115392 E065 42.1542156 0.0081947913 5.930185e-01 8.726523e-01 2 58165873 58165874 2 - 1.652 1.619 -0.114
ENSG00000115392 E066 87.0391173 0.1491989239 1.987057e-02 2.349488e-01 2 58165875 58167767 1893 - 1.708 2.064 1.199
ENSG00000115392 E067 52.2709867 0.1630410168 7.881915e-02 4.150287e-01 2 58167768 58169301 1534 - 1.543 1.825 0.958
ENSG00000115392 E068 90.1071628 0.2158005926 1.014142e-01 4.598886e-01 2 58169302 58172907 3606 - 1.806 2.047 0.808
ENSG00000115392 E069 3.6412564 0.1875869965 7.251404e-01 9.240344e-01 2 58182940 58183978 1039 - 0.622 0.684 0.263
ENSG00000115392 E070 1.1084497 0.0139074602 3.379939e-01   2 58187784 58188148 365 - 0.223 0.397 1.154
ENSG00000115392 E071 0.9556263 0.0188131097 8.634465e-01   2 58188149 58188358 210 - 0.303 0.278 -0.170
ENSG00000115392 E072 0.3312313 0.0265430708 9.179964e-01   2 58188359 58188440 82 - 0.126 0.114 -0.171
ENSG00000115392 E073 0.1767706 0.0368731032 4.336531e-01   2 58188441 58188540 100 - 0.126 0.000 -13.238
ENSG00000115392 E074 0.1767706 0.0368731032 4.336531e-01   2 58188541 58188551 11 - 0.126 0.000 -13.238
ENSG00000115392 E075 0.1767706 0.0368731032 4.336531e-01   2 58188552 58188639 88 - 0.126 0.000 -13.238
ENSG00000115392 E076 0.6422654 0.0193319352 2.575317e-01   2 58188640 58188755 116 - 0.303 0.114 -1.754
ENSG00000115392 E077 0.1544607 0.0311471063 5.530523e-01   2 58188756 58188923 168 - 0.000 0.114 12.289
ENSG00000115392 E078 0.1544607 0.0311471063 5.530523e-01   2 58188924 58188996 73 - 0.000 0.114 12.289
ENSG00000115392 E079 0.9640548 0.0403107866 8.757122e-01   2 58188997 58190095 1099 - 0.303 0.278 -0.171
ENSG00000115392 E080 1.6931007 0.0112042563 2.628087e-01 6.679013e-01 2 58190096 58191578 1483 - 0.525 0.341 -0.976
ENSG00000115392 E081 0.3607829 0.0274001310 9.235085e-01   2 58193388 58193783 396 - 0.126 0.114 -0.170
ENSG00000115392 E082 2.2247286 0.0087949981 4.056790e-02 3.160390e-01 2 58193784 58194228 445 - 0.671 0.342 -1.625
ENSG00000115392 E083 5.8623887 0.0041474929 6.927321e-02 3.940177e-01 2 58194229 58194273 45 - 0.957 0.739 -0.844
ENSG00000115392 E084 0.6155160 0.0196073382 8.951106e-01   2 58197270 58198578 1309 - 0.223 0.204 -0.167
ENSG00000115392 E085 13.0908584 0.0513060872 4.446702e-02 3.281974e-01 2 58198579 58198593 15 - 1.277 0.999 -0.998
ENSG00000115392 E086 61.7958007 0.0115680660 2.255419e-02 2.479163e-01 2 58198594 58198662 69 - 1.880 1.723 -0.531
ENSG00000115392 E087 68.6678562 0.0134264288 4.762082e-02 3.374903e-01 2 58204130 58204226 97 - 1.917 1.776 -0.477
ENSG00000115392 E088 11.4870987 0.0225762777 1.956755e-05 4.825178e-03 2 58204227 58206519 2293 - 0.703 1.262 2.094
ENSG00000115392 E089 1.0194080 0.0221190320 1.275849e-02   2 58206520 58206522 3 - 0.000 0.446 14.826
ENSG00000115392 E090 1.0194080 0.0221190320 1.275849e-02   2 58206523 58206526 4 - 0.000 0.446 14.826
ENSG00000115392 E091 1.5079022 0.0210156974 1.847235e-03   2 58206527 58206586 60 - 0.000 0.567 15.369
ENSG00000115392 E092 9.7804154 0.0029737492 1.913249e-05 4.731978e-03 2 58206587 58209027 2441 - 0.701 1.194 1.861
ENSG00000115392 E093 1.1632618 0.0136825364 7.370298e-02   2 58209925 58210038 114 - 0.126 0.446 2.415
ENSG00000115392 E094 2.4529216 0.0083172382 1.221160e-01 4.974211e-01 2 58210039 58210240 202 - 0.370 0.632 1.289
ENSG00000115392 E095 13.1432266 0.1034803734 1.316935e-01 5.129225e-01 2 58210241 58212635 2395 - 0.951 1.259 1.114
ENSG00000115392 E096 0.6356258 0.0952408421 3.774633e-01   2 58212636 58212907 272 - 0.125 0.279 1.435
ENSG00000115392 E097 1.1777671 0.2727758880 4.684694e-01   2 58212908 58213503 596 - 0.229 0.396 1.101
ENSG00000115392 E098 2.9281001 0.0070511562 6.894013e-01 9.115136e-01 2 58213504 58213612 109 - 0.566 0.632 0.294
ENSG00000115392 E099 4.4641551 0.0071420042 1.949353e-01 5.976747e-01 2 58213613 58213706 94 - 0.638 0.825 0.762
ENSG00000115392 E100 1.3775397 0.0140133452 6.100010e-01   2 58217248 58217434 187 - 0.428 0.342 -0.487
ENSG00000115392 E101 0.8744502 0.3136456247 5.680924e-02   2 58220594 58221941 1348 - 0.000 0.401 13.762
ENSG00000115392 E102 78.5733562 0.0148124010 1.727397e-03 7.383164e-02 2 58221942 58222038 97 - 2.016 1.789 -0.764
ENSG00000115392 E103 42.3089654 0.0189130952 2.845514e-03 9.562510e-02 2 58222039 58222042 4 - 1.769 1.511 -0.879
ENSG00000115392 E104 0.8715870 0.0546014426 7.805849e-01   2 58222043 58223517 1475 - 0.225 0.278 0.408
ENSG00000115392 E105 0.0000000       2 58223518 58223565 48 -      
ENSG00000115392 E106 0.0000000       2 58223566 58224000 435 -      
ENSG00000115392 E107 0.1125166 0.0322088546 4.364192e-01   2 58226043 58226727 685 - 0.125 0.000 -13.257
ENSG00000115392 E108 60.3945318 0.0126766275 8.792300e-05 1.260349e-02 2 58226728 58226775 48 - 1.927 1.650 -0.938
ENSG00000115392 E109 40.2369469 0.0137668890 8.748478e-05 1.255749e-02 2 58226776 58226782 7 - 1.765 1.461 -1.033
ENSG00000115392 E110 38.5410439 0.0111091446 2.592181e-05 5.719677e-03 2 58226783 58226784 2 - 1.751 1.439 -1.063
ENSG00000115392 E111 1.5730213 0.0119314421 2.743033e-01   2 58226785 58227390 606 - 0.524 0.342 -0.970
ENSG00000115392 E112 1.6524700 0.0129264545 9.416575e-01 9.863974e-01 2 58227391 58229658 2268 - 0.428 0.446 0.096
ENSG00000115392 E113 0.0000000       2 58229659 58229813 155 -      
ENSG00000115392 E114 67.7740407 0.0111657911 3.046852e-06 1.291281e-03 2 58229814 58229874 61 - 1.988 1.680 -1.038
ENSG00000115392 E115 0.3513410 0.0280023962 2.405901e-01   2 58230317 58232053 1737 - 0.000 0.204 13.284
ENSG00000115392 E116 62.9684057 0.0047239800 1.811762e-08 2.536271e-05 2 58232054 58232112 59 - 1.957 1.654 -1.024
ENSG00000115392 E117 63.2706914 0.0118191972 2.101514e-06 1.000689e-03 2 58241218 58241410 193 - 1.963 1.646 -1.069