ENSG00000100325

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000307790 ENSG00000100325 HEK293_DMSO_6hA HEK293_OSMI2_6hA ASCC2 protein_coding protein_coding 63.32257 64.52775 82.0205 5.025033 8.172087 0.3460172 28.90997 29.56266 36.48031 1.843304 5.957596 0.3032496 0.4463458 0.4593333 0.4384 -0.02093333 8.031886e-01 3.428958e-05 FALSE TRUE
ENST00000397771 ENSG00000100325 HEK293_DMSO_6hA HEK293_OSMI2_6hA ASCC2 protein_coding protein_coding 63.32257 64.52775 82.0205 5.025033 8.172087 0.3460172 18.34829 15.89880 28.83720 1.480062 3.381888 0.8586068 0.2953542 0.2460000 0.3504 0.10440000 3.428958e-05 3.428958e-05 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_OSMI2_6hA HEK293_DMSO_6hA log2fold_HEK293_DMSO_6hA_HEK293_OSMI2_6hA
ENSG00000100325 E001 3.2717734 3.698159e-02 9.654263e-01 0.992070676 22 29788479 29788562 84 - 0.620 0.620 -0.002
ENSG00000100325 E002 0.4749367 2.934993e-02 1.209571e-01   22 29788609 29788610 2 - 0.270 0.000 -10.474
ENSG00000100325 E003 2.2069409 7.172713e-02 9.344376e-01 0.984646818 22 29788611 29788612 2 - 0.485 0.492 0.034
ENSG00000100325 E004 2.2069409 7.172713e-02 9.344376e-01 0.984646818 22 29788613 29788615 3 - 0.485 0.492 0.034
ENSG00000100325 E005 3.5189715 5.753801e-02 5.878137e-01 0.870324814 22 29788616 29788619 4 - 0.594 0.686 0.397
ENSG00000100325 E006 30.2188490 2.419496e-03 6.832534e-02 0.392108196 22 29788620 29788641 22 - 1.429 1.548 0.409
ENSG00000100325 E007 225.5872662 3.822113e-04 8.270152e-01 0.956104217 22 29788642 29788728 87 - 2.348 2.354 0.020
ENSG00000100325 E008 549.1953119 8.579022e-04 4.937457e-01 0.826269599 22 29788729 29788852 124 - 2.744 2.732 -0.041
ENSG00000100325 E009 1155.0700235 1.197054e-03 3.422256e-01 0.733699896 22 29788853 29789184 332 - 3.067 3.054 -0.044
ENSG00000100325 E010 628.7589909 6.220843e-04 9.300083e-01 0.983369697 22 29790469 29790548 80 - 2.795 2.798 0.010
ENSG00000100325 E011 721.5317935 7.954152e-04 6.504052e-01 0.896648884 22 29792433 29792535 103 - 2.860 2.853 -0.021
ENSG00000100325 E012 703.9089712 1.258410e-04 2.103003e-02 0.240551148 22 29793360 29793490 131 - 2.860 2.828 -0.105
ENSG00000100325 E013 8.5652954 1.209223e-02 4.539111e-01 0.805590246 22 29793491 29793576 86 - 0.928 1.020 0.339
ENSG00000100325 E014 324.0737480 3.623641e-04 1.539572e-01 0.544816142 22 29793577 29793586 10 - 2.522 2.493 -0.098
ENSG00000100325 E015 602.2739694 8.963359e-05 4.615459e-01 0.809406559 22 29793587 29793676 90 - 2.782 2.772 -0.036
ENSG00000100325 E016 4.2052117 1.491967e-02 2.318854e-01 0.636972848 22 29799195 29799302 108 - 0.619 0.797 0.737
ENSG00000100325 E017 622.8405672 1.335736e-03 8.820446e-01 0.971758702 22 29800991 29801110 120 - 2.793 2.794 0.002
ENSG00000100325 E018 421.4315014 1.022528e-04 4.189709e-01 0.785604183 22 29801994 29802061 68 - 2.629 2.615 -0.047
ENSG00000100325 E019 371.0547346 1.307417e-04 3.310989e-03 0.103604696 22 29802062 29802114 53 - 2.592 2.537 -0.183
ENSG00000100325 E020 283.0067350 1.502801e-04 3.822785e-05 0.007365929 22 29802115 29802133 19 - 2.489 2.401 -0.293
ENSG00000100325 E021 381.1193691 1.423031e-04 1.967656e-03 0.078942875 22 29802134 29802208 75 - 2.604 2.547 -0.190
ENSG00000100325 E022 728.5562133 3.267425e-04 2.158588e-01 0.620582392 22 29804638 29804830 193 - 2.849 2.869 0.067
ENSG00000100325 E023 1.7109712 1.037607e-02 2.339619e-01 0.638849130 22 29806214 29806215 2 - 0.518 0.312 -1.130
ENSG00000100325 E024 476.1902716 1.730209e-04 2.317239e-02 0.250815408 22 29806216 29806290 75 - 2.653 2.692 0.131
ENSG00000100325 E025 476.2924839 1.347093e-04 1.485582e-01 0.537099733 22 29806485 29806553 69 - 2.661 2.685 0.081
ENSG00000100325 E026 404.7170070 1.190599e-04 7.946281e-01 0.946393044 22 29806797 29806835 39 - 2.601 2.606 0.015
ENSG00000100325 E027 446.9902508 1.266973e-04 5.086466e-01 0.834002949 22 29806836 29806904 69 - 2.639 2.651 0.039
ENSG00000100325 E028 386.4728371 3.361405e-03 8.574857e-01 0.964958898 22 29808111 29808185 75 - 2.582 2.587 0.016
ENSG00000100325 E029 0.8832900 2.378434e-01 3.157288e-01   22 29809895 29810288 394 - 0.344 0.131 -1.783
ENSG00000100325 E030 362.9076085 4.357476e-04 2.122967e-01 0.616902450 22 29813430 29813470 41 - 2.542 2.569 0.088
ENSG00000100325 E031 447.3616322 7.918342e-04 3.946002e-01 0.769718292 22 29813471 29813542 72 - 2.639 2.656 0.058
ENSG00000100325 E032 517.4452255 1.652140e-03 9.579719e-02 0.449714062 22 29814657 29814767 111 - 2.692 2.731 0.131
ENSG00000100325 E033 1.6895845 2.425314e-01 4.867078e-01 0.822888680 22 29815172 29815205 34 - 0.345 0.488 0.776
ENSG00000100325 E034 2.0175413 1.420545e-01 9.620304e-02 0.450318055 22 29815206 29815289 84 - 0.275 0.616 1.825
ENSG00000100325 E035 0.8448376 5.296590e-02 1.241822e-01   22 29815290 29815293 4 - 0.110 0.380 2.281
ENSG00000100325 E036 383.7443020 1.127374e-04 2.218194e-02 0.246446318 22 29816006 29816073 68 - 2.560 2.602 0.139
ENSG00000100325 E037 0.1717682 3.255482e-02 4.068537e-01   22 29816653 29816740 88 - 0.000 0.130 9.294
ENSG00000100325 E038 1.0080507 1.507152e-02 1.447724e-01   22 29821892 29822075 184 - 0.387 0.130 -2.039
ENSG00000100325 E039 16.5985555 1.916985e-03 2.424651e-01 0.647426174 22 29822142 29822334 193 - 1.194 1.292 0.345
ENSG00000100325 E040 254.5750753 1.382388e-04 1.365059e-01 0.520209112 22 29822335 29822351 17 - 2.387 2.420 0.111
ENSG00000100325 E041 354.8801727 7.332532e-04 9.269403e-02 0.443342520 22 29822352 29822395 44 - 2.527 2.565 0.126
ENSG00000100325 E042 393.4185736 2.879486e-03 8.149219e-01 0.952983701 22 29822396 29822464 69 - 2.591 2.595 0.012
ENSG00000100325 E043 256.5598060 6.474188e-04 8.645037e-01 0.966973648 22 29825087 29825102 16 - 2.403 2.407 0.014
ENSG00000100325 E044 253.6335273 2.589609e-04 9.490484e-01 0.988091339 22 29825103 29825107 5 - 2.398 2.400 0.006
ENSG00000100325 E045 341.9346253 2.161708e-04 8.707012e-01 0.968282832 22 29825108 29825160 53 - 2.527 2.530 0.012
ENSG00000100325 E046 301.8821294 1.408948e-04 7.849232e-01 0.943702007 22 29825161 29825213 53 - 2.472 2.478 0.020
ENSG00000100325 E047 251.8853123 1.709094e-04 6.960213e-01 0.913741279 22 29825214 29825257 44 - 2.396 2.405 0.029
ENSG00000100325 E048 3.7250309 6.457864e-02 3.915254e-02 0.311320904 22 29825258 29825358 101 - 0.439 0.821 1.685
ENSG00000100325 E049 276.6967550 1.615853e-03 7.050063e-01 0.916965861 22 29825622 29825693 72 - 2.447 2.436 -0.037
ENSG00000100325 E050 286.6603702 4.969907e-04 4.049866e-01 0.776870563 22 29825694 29825780 87 - 2.467 2.447 -0.066
ENSG00000100325 E051 10.7916590 4.331777e-02 2.944461e-02 0.277265818 22 29825781 29826131 351 - 0.893 1.188 1.080
ENSG00000100325 E052 19.2081317 6.442238e-02 5.103782e-01 0.834921960 22 29827477 29827600 124 - 1.263 1.331 0.237
ENSG00000100325 E053 238.3717256 1.547570e-03 5.543326e-01 0.855646215 22 29832245 29832342 98 - 2.386 2.369 -0.058
ENSG00000100325 E054 17.7100108 1.962379e-03 2.154599e-02 0.243176113 22 29832343 29832580 238 - 1.170 1.356 0.656
ENSG00000100325 E055 17.7885877 3.385525e-02 7.060406e-02 0.396973992 22 29833541 29833614 74 - 1.158 1.364 0.724
ENSG00000100325 E056 21.1314608 7.597676e-02 2.611022e-01 0.666342978 22 29834086 29834441 356 - 1.270 1.406 0.475
ENSG00000100325 E057 14.2870912 2.642935e-02 2.714914e-01 0.675503976 22 29834442 29834488 47 - 1.104 1.235 0.466
ENSG00000100325 E058 81.0810804 3.496905e-04 2.377745e-01 0.642994377 22 29834489 29834550 62 - 1.933 1.886 -0.155
ENSG00000100325 E059 1.2729762 1.519501e-01 4.052199e-01   22 29836438 29836500 63 - 0.271 0.437 1.004
ENSG00000100325 E060 98.7764766 2.147827e-03 1.854290e-01 0.586029032 22 29838178 29838304 127 - 2.025 1.970 -0.184