ENSG00000013573

1 Isoform Switch

Summary Plot

Only the isoforms with fraction > 5% are shown below.

Notes on IDR and IDR_w_binding: As the prediction of Intrinsically Disordered Regions (IDR) and Intrinsically Disordered Binding Regions (IDBR) are done by two different tools we require two things to annotate the Intrinsically Disordered Binding Regions (IDBR). Firstly the IDBR (predicted by ANCHOR2) must be a region of at least 15 amino acids (after the smoothing). Secondly the fraction of the IDBR which overlaps the IDR predictions (done by IUPred3, again after smoothing) must be at least 80%. When that is the case the IDR type will be annotated as “IDR_w_binding_region” instead of just “IDR”. The current default parameters have not been rigorously tested and should be considered experimental.

For the function of any other domain, please Click HERE to search it through Pfam database.

Results

isoform_id gene_id condition_1 condition_2 gene_name gene_biotype iso_biotype gene_overall_mean gene_value_1 gene_value_2 gene_stderr_1 gene_stderr_2 gene_log2_fold_change iso_overall_mean iso_value_1 iso_value_2 iso_stderr_1 iso_stderr_2 iso_log2_fold_change IF_overall IF1 IF2 dIF isoform_switch_q_value gene_switch_q_value PTC codingPotential
ENST00000537136 ENSG00000013573 HEK293_DMSO_6hA HEK293_OSMI2_6hA DDX11 protein_coding retained_intron 86.06593 149.5069 109.0143 3.01166 21.72986 -0.4556587 5.255514 11.247876 5.986632 0.7707553 2.578693 -0.9087103 0.05897500 0.07533333 0.05010000 -0.025233333 4.093554e-01 4.26677e-20 FALSE FALSE
ENST00000538345 ENSG00000013573 HEK293_DMSO_6hA HEK293_OSMI2_6hA DDX11 protein_coding nonsense_mediated_decay 86.06593 149.5069 109.0143 3.01166 21.72986 -0.4556587 4.502285 7.518820 4.570112 1.0643867 0.753260 -0.7170408 0.05288750 0.05063333 0.04260000 -0.008033333 7.535354e-01 4.26677e-20 FALSE TRUE
ENST00000538740 ENSG00000013573 HEK293_DMSO_6hA HEK293_OSMI2_6hA DDX11 protein_coding retained_intron 86.06593 149.5069 109.0143 3.01166 21.72986 -0.4556587 5.434140 11.554632 5.975914 0.8797955 2.794686 -0.9500761 0.06144583 0.07713333 0.04963333 -0.027500000 3.587579e-01 4.26677e-20   FALSE
ENST00000539699 ENSG00000013573 HEK293_DMSO_6hA HEK293_OSMI2_6hA DDX11 protein_coding retained_intron 86.06593 149.5069 109.0143 3.01166 21.72986 -0.4556587 5.117748 12.019247 5.518556 1.4257015 2.407107 -1.1215718 0.05689583 0.08013333 0.04740000 -0.032733333 3.364406e-01 4.26677e-20 FALSE TRUE
ENST00000539702 ENSG00000013573 HEK293_DMSO_6hA HEK293_OSMI2_6hA DDX11 protein_coding protein_coding 86.06593 149.5069 109.0143 3.01166 21.72986 -0.4556587 12.591019 24.146555 17.385384 1.0909878 2.860741 -0.4737102 0.14150833 0.16193333 0.16273333 0.000800000 1.000000e+00 4.26677e-20 FALSE TRUE
ENST00000542777 ENSG00000013573 HEK293_DMSO_6hA HEK293_OSMI2_6hA DDX11 protein_coding retained_intron 86.06593 149.5069 109.0143 3.01166 21.72986 -0.4556587 6.486264 14.073758 7.336891 0.8713517 3.374773 -0.9388266 0.07265417 0.09400000 0.06146667 -0.032533333 3.564580e-01 4.26677e-20   FALSE
ENST00000542838 ENSG00000013573 HEK293_DMSO_6hA HEK293_OSMI2_6hA DDX11 protein_coding protein_coding 86.06593 149.5069 109.0143 3.01166 21.72986 -0.4556587 6.077024 0.000000 10.289741 0.0000000 2.623104 10.0083923 0.08008750 0.00000000 0.11093333 0.110933333 4.266770e-20 4.26677e-20 FALSE TRUE
MSTRG.7070.5 ENSG00000013573 HEK293_DMSO_6hA HEK293_OSMI2_6hA DDX11 protein_coding   86.06593 149.5069 109.0143 3.01166 21.72986 -0.4556587 4.660483 7.780926 4.977862 0.4551045 1.783754 -0.6433733 0.05525417 0.05206667 0.04293333 -0.009133333 7.392838e-01 4.26677e-20 FALSE TRUE
MSTRG.7070.6 ENSG00000013573 HEK293_DMSO_6hA HEK293_OSMI2_6hA DDX11 protein_coding   86.06593 149.5069 109.0143 3.01166 21.72986 -0.4556587 8.663942 18.088641 11.317150 1.0516215 3.108620 -0.6760965 0.09766667 0.12086667 0.10066667 -0.020200000 5.925574e-01 4.26677e-20 FALSE TRUE
  • Note:
    • The comparisons made can be identified as “from ‘condition_1’ to ‘condition_2’”, meaning ‘condition_1’ is considered the ground state and ‘condition_2’ the changed state. This also means that a positive dIF value indicates that the isoform usage is increased in ‘condition_2’ compared to ‘condition_1’. Since the ‘isoformFeatures’ entry is the most relevant part of the switchAnalyzeRlist object, the most-used standard methods have also been implemented to work directly on isoformFeatures.

2 Differential Exon Usage

Counts

All exons whithin this gene region are shown and numbering below.

Expression

All exons whithin this gene region are shown and numbering below.

Splicing

All exons whithin this gene region are shown and numbering below.

Transcripts

All isoforms whithin this gene region are shown below.

Results

groupID featureID exonBaseMean dispersion pvalue padj seqnames start end width strand HEK293_OSMI2_6hA HEK293_DMSO_6hA log2fold_HEK293_DMSO_6hA_HEK293_OSMI2_6hA
ENSG00000013573 E001 3.125625 0.1327354091 0.2576402605 0.663361922 12 31073852 31073855 4 + 0.712 0.491 -0.984
ENSG00000013573 E002 5.960395 0.0515342140 0.3619776447 0.748226763 12 31073856 31073859 4 + 0.903 0.786 -0.454
ENSG00000013573 E003 15.464184 0.0157741184 0.0286307905 0.274162361 12 31073860 31073867 8 + 1.315 1.115 -0.709
ENSG00000013573 E004 44.996144 0.0006860632 0.2034738906 0.607278540 12 31073868 31073875 8 + 1.680 1.631 -0.166
ENSG00000013573 E005 47.065225 0.0007869725 0.3122768904 0.710070410 12 31073876 31073878 3 + 1.692 1.658 -0.116
ENSG00000013573 E006 52.904269 0.0008033988 0.1430952299 0.529632294 12 31073879 31073881 3 + 1.750 1.696 -0.183
ENSG00000013573 E007 64.384933 0.0006991866 0.0837969960 0.425374231 12 31073882 31073890 9 + 1.837 1.777 -0.200
ENSG00000013573 E008 67.274422 0.0004518769 0.1376776969 0.521733172 12 31073891 31073891 1 + 1.849 1.803 -0.156
ENSG00000013573 E009 94.124864 0.0003119034 0.3702556377 0.753669068 12 31073892 31073893 2 + 1.976 1.961 -0.052
ENSG00000013573 E010 101.018180 0.0002798723 0.1334576053 0.515416674 12 31073894 31073897 4 + 2.019 1.983 -0.119
ENSG00000013573 E011 105.822614 0.0002658485 0.1394601598 0.524389218 12 31073898 31073901 4 + 2.038 2.005 -0.112
ENSG00000013573 E012 109.145037 0.0002581573 0.1615302285 0.556253902 12 31073902 31073908 7 + 2.050 2.020 -0.100
ENSG00000013573 E013 157.990601 0.0002189603 0.1972109212 0.600528648 12 31073909 31073969 61 + 2.202 2.183 -0.065
ENSG00000013573 E014 180.004021 0.0004249648 0.3104301019 0.708482501 12 31073970 31074054 85 + 2.255 2.243 -0.039
ENSG00000013573 E015 117.373084 0.0005771364 0.0184737836 0.228487252 12 31074055 31074091 37 + 2.097 2.034 -0.210
ENSG00000013573 E016 2.605056 0.0079074858 0.4893616437 0.824277830 12 31074214 31074219 6 + 0.478 0.602 0.581
ENSG00000013573 E017 15.250706 0.0018496799 0.7592607763 0.935617287 12 31074220 31074255 36 + 1.206 1.196 -0.034
ENSG00000013573 E018 20.348392 0.0014066551 0.5022223239 0.830815716 12 31074256 31074261 6 + 1.281 1.349 0.238
ENSG00000013573 E019 24.385183 0.0012117661 0.3965865637 0.770826213 12 31074262 31074263 2 + 1.357 1.433 0.265
ENSG00000013573 E020 55.591014 0.0005533736 0.5877116896 0.870320607 12 31074264 31074327 64 + 1.723 1.766 0.146
ENSG00000013573 E021 19.565567 0.0015125440 0.0214795686 0.242792997 12 31077945 31078107 163 + 1.388 1.228 -0.556
ENSG00000013573 E022 11.561414 0.0064523845 0.0394715390 0.312507848 12 31078108 31078177 70 + 1.179 0.988 -0.693
ENSG00000013573 E023 10.558172 0.0087171035 0.4172975918 0.784885322 12 31078178 31078194 17 + 1.092 1.026 -0.240
ENSG00000013573 E024 20.868393 0.0405012821 0.4198868520 0.785961929 12 31078195 31078288 94 + 1.364 1.304 -0.208
ENSG00000013573 E025 130.853568 0.0003160579 0.0588718047 0.368611690 12 31078390 31078414 25 + 2.134 2.093 -0.138
ENSG00000013573 E026 144.409454 0.0002529940 0.0000443713 0.008233734 12 31078415 31078462 48 + 2.207 2.103 -0.346
ENSG00000013573 E027 164.226844 0.0033725384 0.0457480433 0.332115242 12 31078463 31078519 57 + 2.244 2.186 -0.195
ENSG00000013573 E028 111.257634 0.0088925193 0.2776329603 0.681059943 12 31078520 31078537 18 + 2.069 2.029 -0.135
ENSG00000013573 E029 123.910822 0.0068030726 0.5663856367 0.860644143 12 31083813 31083827 15 + 2.101 2.090 -0.039
ENSG00000013573 E030 183.570547 0.0025503950 0.2961583907 0.696628627 12 31083828 31083876 49 + 2.274 2.254 -0.066
ENSG00000013573 E031 274.220282 0.0021546671 0.1866548389 0.587561010 12 31083877 31083966 90 + 2.446 2.425 -0.071
ENSG00000013573 E032 258.494337 0.0034392552 0.1327158755 0.514286853 12 31083967 31084061 95 + 2.428 2.394 -0.112
ENSG00000013573 E033 223.238392 0.0020572232 0.1488463295 0.537633428 12 31084583 31084669 87 + 2.361 2.334 -0.091
ENSG00000013573 E034 5.681330 0.0859292986 0.7215100770 0.922688013 12 31084798 31084911 114 + 0.872 0.805 -0.261
ENSG00000013573 E035 159.367286 0.0051998042 0.8705455354 0.968261172 12 31084969 31085009 41 + 2.187 2.214 0.091
ENSG00000013573 E036 289.028292 0.0010014214 0.2296638852 0.634725650 12 31085010 31085126 117 + 2.465 2.452 -0.043
ENSG00000013573 E037 11.769545 0.0024936527 0.4676011755 0.812713423 12 31086014 31086024 11 + 1.137 1.083 -0.192
ENSG00000013573 E038 33.834599 0.0027970497 0.1312302032 0.512100792 12 31086025 31086212 188 + 1.584 1.504 -0.273
ENSG00000013573 E039 20.889715 0.0013510866 0.0129576347 0.195947863 12 31087109 31087311 203 + 1.206 1.414 0.727
ENSG00000013573 E040 10.552157 0.0928422632 0.8593786081 0.965557692 12 31087576 31087644 69 + 1.103 1.002 -0.368
ENSG00000013573 E041 31.884128 0.0226435446 0.6417891469 0.893187820 12 31087645 31087937 293 + 1.486 1.527 0.140
ENSG00000013573 E042 283.135931 0.0003799985 0.4779970202 0.818222049 12 31087938 31087983 46 + 2.430 2.463 0.109
ENSG00000013573 E043 244.616488 0.0001728082 0.1748154992 0.572602932 12 31089044 31089068 25 + 2.356 2.404 0.162
ENSG00000013573 E044 353.029730 0.0001093052 0.9531028397 0.989078012 12 31089069 31089151 83 + 2.531 2.549 0.062
ENSG00000013573 E045 94.443799 0.0716647849 0.0247272111 0.257530049 12 31089152 31089402 251 + 1.842 2.059 0.731
ENSG00000013573 E046 251.439753 0.0001383371 0.6408440452 0.892628661 12 31089403 31089490 88 + 2.390 2.397 0.024
ENSG00000013573 E047 214.531090 0.0296396400 0.0077499302 0.154463151 12 31089491 31089839 349 + 2.212 2.405 0.644
ENSG00000013573 E048 74.731926 0.0337034940 0.0143305611 0.204609939 12 31089840 31089885 46 + 1.742 1.955 0.715
ENSG00000013573 E049 110.346931 0.0011022282 0.0658817230 0.386504087 12 31089886 31089890 5 + 1.992 2.078 0.290
ENSG00000013573 E050 303.366237 0.0017739009 0.8608262460 0.965949691 12 31089891 31090094 204 + 2.466 2.489 0.078
ENSG00000013573 E051 2.670060 0.0279167355 0.0062404698 0.139951552 12 31091037 31091273 237 + 0.223 0.716 2.645
ENSG00000013573 E052 4.235861 0.0831819813 0.2438283965 0.649039730 12 31091553 31091718 166 + 0.577 0.784 0.871
ENSG00000013573 E053 270.304856 0.0003438656 0.0062390546 0.139944162 12 31091719 31091871 153 + 2.453 2.407 -0.153
ENSG00000013573 E054 161.548098 0.0018251813 0.0571194653 0.364102534 12 31092846 31092861 16 + 2.235 2.183 -0.174
ENSG00000013573 E055 176.024110 0.0007459712 0.0064906085 0.141968354 12 31092862 31092892 31 + 2.278 2.214 -0.213
ENSG00000013573 E056 129.112429 0.0014672795 0.0118951032 0.188547765 12 31093245 31093248 4 + 2.151 2.076 -0.250
ENSG00000013573 E057 185.196448 0.0005431219 0.0008668474 0.049911192 12 31093249 31093324 76 + 2.305 2.229 -0.254
ENSG00000013573 E058 24.823154 0.0231571527 0.0084837050 0.160555765 12 31093325 31093720 396 + 1.238 1.504 0.924
ENSG00000013573 E059 26.937893 0.0374030345 0.0096504326 0.170867113 12 31094295 31094589 295 + 1.248 1.544 1.027
ENSG00000013573 E060 134.100806 0.0072218166 0.3507639221 0.740076350 12 31094590 31094634 45 + 2.141 2.114 -0.088
ENSG00000013573 E061 137.134269 0.0069319283 0.1435630432 0.530328095 12 31094755 31094792 38 + 2.165 2.113 -0.177
ENSG00000013573 E062 158.481001 0.0035705940 0.3994500611 0.773086861 12 31094793 31094822 30 + 2.207 2.191 -0.053
ENSG00000013573 E063 217.775571 0.0036494659 0.2171484242 0.621771342 12 31096341 31096379 39 + 2.350 2.322 -0.094
ENSG00000013573 E064 7.237682 0.0168749832 0.4808550258 0.819645752 12 31096635 31096636 2 + 0.849 0.945 0.366
ENSG00000013573 E065 360.510749 0.0015103818 0.1962570245 0.599463338 12 31096637 31096745 109 + 2.562 2.544 -0.060
ENSG00000013573 E066 298.876327 0.0001409845 0.2478851643 0.653381731 12 31096859 31096913 55 + 2.473 2.466 -0.022
ENSG00000013573 E067 348.508429 0.0001063567 0.2185697636 0.623165069 12 31096914 31096990 77 + 2.539 2.533 -0.020
ENSG00000013573 E068 336.336850 0.0001205151 0.0955802088 0.449331919 12 31097885 31097997 113 + 2.529 2.514 -0.049
ENSG00000013573 E069 27.722140 0.1512270486 0.1002563832 0.457807617 12 31100407 31100559 153 + 1.343 1.523 0.621
ENSG00000013573 E070 30.527714 0.1100088478 0.0927362700 0.443405747 12 31100560 31100634 75 + 1.381 1.565 0.631
ENSG00000013573 E071 241.742881 0.0009482812 0.1309709535 0.511756130 12 31100635 31100707 73 + 2.392 2.368 -0.081
ENSG00000013573 E072 83.003934 0.0611049697 0.0046553502 0.122585957 12 31100708 31100904 197 + 1.725 2.029 1.025
ENSG00000013573 E073 47.719373 0.0824648417 0.0484683354 0.340203677 12 31100999 31101026 28 + 1.556 1.761 0.699
ENSG00000013573 E074 182.678501 0.0015465485 0.2963036244 0.696733132 12 31101027 31101044 18 + 2.267 2.248 -0.063
ENSG00000013573 E075 321.346241 0.0003316343 0.6372778981 0.891255706 12 31101045 31101130 86 + 2.495 2.503 0.025
ENSG00000013573 E076 111.258378 0.0771715021 0.0093280425 0.168096591 12 31101131 31101475 345 + 1.873 2.147 0.920
ENSG00000013573 E077 90.512305 0.0862489147 0.0133685332 0.199340920 12 31101513 31101832 320 + 1.791 2.056 0.890
ENSG00000013573 E078 382.993132 0.0001262531 0.7464944641 0.931637684 12 31101833 31101982 150 + 2.568 2.580 0.039
ENSG00000013573 E079 28.109584 0.0627488839 0.0442434543 0.327330055 12 31102214 31102242 29 + 1.299 1.553 0.876
ENSG00000013573 E080 231.540845 0.0025683769 0.9692602079 0.992820266 12 31102243 31102267 25 + 2.350 2.369 0.063
ENSG00000013573 E081 245.181510 0.0002273768 0.1340490849 0.516277733 12 31102268 31102311 44 + 2.355 2.407 0.176
ENSG00000013573 E082 10.772686 0.0025291007 0.9899093334 0.997492982 12 31102312 31102335 24 + 1.056 1.073 0.061
ENSG00000013573 E083 209.528587 0.0002506590 0.1002223358 0.457741907 12 31102427 31102450 24 + 2.282 2.341 0.197
ENSG00000013573 E084 301.044643 0.0004526092 0.1668222128 0.562963646 12 31102451 31102527 77 + 2.445 2.493 0.159
ENSG00000013573 E085 23.842907 0.1243297475 0.2889071882 0.690538410 12 31102528 31102729 202 + 1.347 1.418 0.247
ENSG00000013573 E086 195.201102 0.0009295537 0.4208100017 0.786571157 12 31102936 31102974 39 + 2.287 2.280 -0.026
ENSG00000013573 E087 223.499548 0.0007083650 0.6607647828 0.900829826 12 31102975 31103020 46 + 2.338 2.343 0.019
ENSG00000013573 E088 82.689295 0.0430361261 0.0433285700 0.324546129 12 31103021 31103218 198 + 1.808 1.989 0.609
ENSG00000013573 E089 163.375408 0.0004042450 0.8829047215 0.971909147 12 31103317 31103321 5 + 2.193 2.215 0.072
ENSG00000013573 E090 306.661637 0.0012516694 0.9718319240 0.993321755 12 31103322 31103395 74 + 2.470 2.488 0.057
ENSG00000013573 E091 27.594309 0.0652761158 0.0334852275 0.292354682 12 31103396 31103460 65 + 1.291 1.545 0.879
ENSG00000013573 E092 447.252877 0.0031405822 0.3884749786 0.766108471 12 31103577 31103731 155 + 2.650 2.644 -0.022
ENSG00000013573 E093 182.352503 0.0323755874 0.0213512516 0.242169374 12 31103732 31103806 75 + 2.156 2.327 0.571
ENSG00000013573 E094 1653.705726 0.0015196445 0.1453579058 0.532854363 12 31103807 31104799 993 + 3.189 3.234 0.151